fix: wrong tag for query end, cg tag is the same as sc

fulcrumgenomics · Sep 20, 2023 · bacc6a3 · bacc6a3
1 parent 6c0cd8a
commit bacc6a3
Showing 1 changed file with 1 addition and 9 deletions.
diff --git a/fg-stitch-lib/src/align/aligners/mod.rs b/fg-stitch-lib/src/align/aligners/mod.rs
@@ -875,7 +875,7 @@ impl<'a, F: MatchFunc> SamRecordFormatter<'a, F> {
                     noodles::sam::record::data::field::Value::from(sub.query_start as u32),
                 );
                 data.insert(
-                    CustomTag::QueryStart.into(),
+                    CustomTag::QueryEnd.into(),
                     noodles::sam::record::data::field::Value::from(sub.query_end as u32),
                 );
                 data.insert(
@@ -920,14 +920,6 @@ impl<'a, F: MatchFunc> SamRecordFormatter<'a, F> {
                     CustomTag::NumberOfChains.into(),
                     noodles::sam::record::data::field::Value::from(chains.len() as i32),
                 );
-                data.insert(
-                    "cg".parse().unwrap(),
-                    noodles::sam::record::data::field::Value::from_str_type(
-                        &cigar_str,
-                        noodles::sam::record::data::field::Type::String,
-                    )
-                    .unwrap(),
-                );
                 data.insert(
                     ALIGNMENT_SCORE,
                     noodles::sam::record::data::field::Value::from(sub.score),