Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Upper-case query sequences #26

Merged
merged 1 commit into from
Sep 7, 2023
Merged

Upper-case query sequences #26

merged 1 commit into from
Sep 7, 2023

Conversation

jdidion
Copy link
Collaborator

@jdidion jdidion commented Sep 7, 2023

Fix for #25: query sequences are converted to upper-case as they are processed.

The unit test uses (what I consider) a hack to build the Args object to pass to build_aligners. This should be addressed in a future refactoring.

I also got rid of an unnecessary allocation I noticed.

@jdidion jdidion requested a review from nh13 September 7, 2023 18:08
@jdidion
Copy link
Collaborator Author

jdidion commented Sep 7, 2023

CI is failing due to Clippy issues. I'll create a separate issue for that and fix them.

@jdidion jdidion changed the title Upper-case query sequences Upper-case query sequences (issue #25) Sep 7, 2023
@jdidion jdidion changed the title Upper-case query sequences (issue #25) Upper-case query sequences Sep 7, 2023
@jdidion jdidion changed the base branch from main to bug-27-clippy-issues September 7, 2023 18:31

#[test]
fn test_case_insensitive() {
// HACK: creating an `Aligners` should not require parsing command line arguments
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

lgtm!

@jdidion jdidion changed the base branch from bug-27-clippy-issues to main September 7, 2023 23:06
@jdidion jdidion merged commit 8a37816 into main Sep 7, 2023
4 checks passed
@jdidion jdidion deleted the bug-25-case-insensitive branch September 13, 2023 00:10
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants