Release 1.1

Second agnostos-wf release.

Notable changes:

1. The workflow general structure slightly changed since the first release: the DB-creation and DB-update modules are now gathered into one workflow folder and to switch between them you just need to specify the module in the config.yaml file.

2. It is now possible to classify the singletons into the 4 categories (K, KWP, GU and EU) by setting singl: "true" in the config.yaml file.

3. It is now also possible to re-validate and classify the existing GCs that got integrated with new genes by setting
   eval_shared: "true" in the config.yaml file. At the moment, all shared GCs is the default (shared_type: "all"), other possibilities are: "discarded" for reprocessing all the previously discarded GCs with new sequences and "increase" for reprocessing all the shared GCs with 30% new sequences.

4. The required databases can be downloaded and then removed in each step, to reduced the amount of space needed by the workflow (db_mode: "memory").

First release

First agnostos-wf release