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@funkelab

Funke lab

Janelia Research Campus

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  1. gunpowder gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 81 56

  2. lsd lsd Public

    🌈

    Python 53 33

  3. daisy daisy Public

    Block-wise task scheduling for large nD volumes.

    Python 29 18

  4. motile motile Public

    Multi-Object Tracker using Integer Linear Equations

    Python 28 5

  5. cellulus cellulus Public

    Unsupervised Instance Segmentation in Microscopy

    Python 21 2

  6. linajea linajea Public

    Python 17 7

Repositories

Showing 10 of 73 repositories
  • spatial_graph Public

    A spatial graph datastructure for python

    funkelab/spatial_graph’s past year of commit activity
    C++ 3 MIT 1 3 0 Updated Jan 17, 2025
  • motile_tracker Public

    A napari plugin for tracking with motile

    funkelab/motile_tracker’s past year of commit activity
    Python 5 BSD-3-Clause 3 29 2 Updated Jan 17, 2025
  • geff Public

    Reference implementation of the Graph Exchange File Format

    funkelab/geff’s past year of commit activity
    Python 0 0 0 1 Updated Jan 17, 2025
  • motile_toolbox Public

    A toolbox for tracking with motile, including constructing candidate graphs and computing common features.

    funkelab/motile_toolbox’s past year of commit activity
    Python 4 1 2 2 Updated Jan 16, 2025
  • synister Public

    Neurotransmitter prediction from EM.

    funkelab/synister’s past year of commit activity
    Python 10 5 0 1 Updated Jan 13, 2025
  • funlib.persistence Public

    Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

    funkelab/funlib.persistence’s past year of commit activity
    Python 4 MIT 11 6 1 Updated Jan 13, 2025
  • quac Public

    Quantitative Attributions with Counterfactuals

    funkelab/quac’s past year of commit activity
    Python 1 MIT 0 7 0 Updated Jan 10, 2025
  • witty Public

    A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.

    funkelab/witty’s past year of commit activity
    Python 1 MIT 1 0 1 Updated Jan 6, 2025
  • motile Public

    Multi-Object Tracker using Integer Linear Equations

    funkelab/motile’s past year of commit activity
    Python 28 MIT 5 18 4 Updated Jan 6, 2025
  • gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    funkelab/gunpowder’s past year of commit activity
    Python 81 MIT 56 10 1 Updated Dec 10, 2024
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