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BDRSPS-1133 Update IRI patterns for Agents #374

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Dec 20, 2024
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BDRSPS-1133 Update IRI patterns for Agents #374

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108 changes: 54 additions & 54 deletions ...ates/incidental_occurrence_data_v3/examples/margaret_river_flora/margaret_river_flora.ttl
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14 changes: 7 additions & 7 deletions abis_mapping/templates/incidental_occurrence_data_v3/mapping.py
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Original file line number Diff line number Diff line change
Expand Up @@ -164,15 +164,15 @@ def apply_mapping_row(
provider_record_id_source: str = row["providerRecordIDSource"]

# Create URIs
provider_identified = utils.iri_patterns.agent_iri(row["identifiedBy"])
provider_identified = utils.iri_patterns.agent_iri("org", row["identifiedBy"])
sample_specimen = utils.iri_patterns.sample_iri(base_iri, "specimen", provider_record_id)
sampling_specimen = utils.iri_patterns.sampling_iri(base_iri, "specimen", provider_record_id)
sample_sequence = utils.iri_patterns.sample_iri(base_iri, "sequence", provider_record_id)
sampling_sequencing = utils.iri_patterns.sampling_iri(base_iri, "sequencing", provider_record_id)
provider_determined_by = utils.iri_patterns.agent_iri(row["threatStatusDeterminedBy"])
provider_determined_by = utils.iri_patterns.agent_iri("org", row["threatStatusDeterminedBy"])

provider_record_id_datatype = utils.iri_patterns.datatype_iri("recordID", provider_record_id_source)
provider_record_id_agent = utils.iri_patterns.agent_iri(provider_record_id_source)
provider_record_id_agent = utils.iri_patterns.agent_iri("org", provider_record_id_source)
provider_record_id_attribution = utils.iri_patterns.attribution_iri(
base_iri, "resourceProvider", provider_record_id_source
)
Expand Down Expand Up @@ -250,7 +250,7 @@ def apply_mapping_row(
# Conditionally create uris dependent on ownerRecordIDSource field
if owner_record_id_source := row["ownerRecordIDSource"]:
owner_record_id_datatype = utils.iri_patterns.datatype_iri("recordID", owner_record_id_source)
owner_record_id_provider = utils.iri_patterns.agent_iri(owner_record_id_source)
owner_record_id_provider = utils.iri_patterns.agent_iri("org", owner_record_id_source)
owner_record_id_attribution = utils.iri_patterns.attribution_iri(base_iri, "owner", owner_record_id_source)
else:
owner_record_id_datatype = None
Expand Down Expand Up @@ -288,7 +288,7 @@ def apply_mapping_row(
# Conditionally create uri's dependent on recordedBy field.
if recorded_by := row["recordedBy"]:
record_number_datatype = utils.iri_patterns.datatype_iri("recordNumber", recorded_by)
provider_recorded_by = utils.iri_patterns.agent_iri(recorded_by)
provider_recorded_by = utils.iri_patterns.agent_iri("org", recorded_by)
else:
record_number_datatype = None
provider_recorded_by = None
Expand All @@ -306,7 +306,7 @@ def apply_mapping_row(
# Conditionally create uris dependent on catalogNumberSource field.
if catalog_number_source := row["catalogNumberSource"]:
catalog_number_datatype = utils.iri_patterns.datatype_iri("catalogNumber", catalog_number_source)
catalog_number_provider = utils.iri_patterns.agent_iri(catalog_number_source)
catalog_number_provider = utils.iri_patterns.agent_iri("org", catalog_number_source)
else:
catalog_number_datatype = None
catalog_number_provider = None
Expand All @@ -316,7 +316,7 @@ def apply_mapping_row(
other_catalog_numbers_datatype = utils.iri_patterns.datatype_iri(
"catalogNumber", other_catalog_numbers_source
)
other_catalog_numbers_provider = utils.iri_patterns.agent_iri(other_catalog_numbers_source)
other_catalog_numbers_provider = utils.iri_patterns.agent_iri("org", other_catalog_numbers_source)
else:
other_catalog_numbers_datatype = None
other_catalog_numbers_provider = None
Expand Down
8 changes: 4 additions & 4 deletions abis_mapping/templates/survey_metadata_v2/examples/minimal.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -43,13 +43,13 @@
<https://linked.data.gov.au/dataset/bdr/datatypes/surveyID/CSIRO> a rdfs:Datatype ;
skos:prefLabel "surveyID source" ;
prov:qualifiedAttribution [ a prov:Attribution ;
prov:agent <https://linked.data.gov.au/dataset/bdr/orgs/CSIRO> ;
prov:agent <https://linked.data.gov.au/dataset/bdr/org/CSIRO> ;
prov:hadRole <https://linked.data.gov.au/def/data-roles/principalInvestigator> ] .

<https://linked.data.gov.au/dataset/bdr/datatypes/surveyID/NSW-Department-of-Planning-Industry-and-Environment> a rdfs:Datatype ;
skos:prefLabel "surveyID source" ;
prov:qualifiedAttribution [ a prov:Attribution ;
prov:agent <https://linked.data.gov.au/dataset/bdr/orgs/NSW-Department-of-Planning-Industry-and-Environment> ;
prov:agent <https://linked.data.gov.au/dataset/bdr/org/NSW-Department-of-Planning-Industry-and-Environment> ;
prov:hadRole <https://linked.data.gov.au/def/data-roles/principalInvestigator> ] .

<https://linked.data.gov.au/dataset/bdr/00000000-0000-0000-0000-000000000000/attribute/surveyType/Wet-pitfall-trapping> a tern:Attribute ;
Expand Down Expand Up @@ -110,10 +110,10 @@
rdfs:label "Insecta" ;
rdf:value <https://linked.data.gov.au/dataset/bdr/00000000-0000-0000-0000-000000000000/bdr-cv/attribute/targetTaxonomicScope/Insecta> .

<https://linked.data.gov.au/dataset/bdr/orgs/CSIRO> a prov:Agent ;
<https://linked.data.gov.au/dataset/bdr/org/CSIRO> a prov:Agent ;
schema:name "CSIRO" .

<https://linked.data.gov.au/dataset/bdr/orgs/NSW-Department-of-Planning-Industry-and-Environment> a prov:Agent ;
<https://linked.data.gov.au/dataset/bdr/org/NSW-Department-of-Planning-Industry-and-Environment> a prov:Agent ;
schema:name "NSW Department of Planning, Industry and Environment" .

<https://linked.data.gov.au/dataset/bdr/00000000-0000-0000-0000-000000000000/Survey/COL1> a tern:Survey ;
Expand Down
2 changes: 1 addition & 1 deletion abis_mapping/templates/survey_metadata_v2/mapping.py
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Original file line number Diff line number Diff line change
Expand Up @@ -189,7 +189,7 @@ def apply_mapping_row(
SurveyIDDatatype(
name=raw_org,
datatype=utils.iri_patterns.datatype_iri("surveyID", raw_org),
agent=utils.iri_patterns.agent_iri(raw_org),
agent=utils.iri_patterns.agent_iri("org", raw_org),
)
)

Expand Down
8 changes: 4 additions & 4 deletions abis_mapping/templates/survey_metadata_v3/examples/minimal.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -83,11 +83,11 @@
tern:hasValue <https://linked.data.gov.au/dataset/bdr/00000000-0000-0000-0000-000000000000/value/targetTaxonomicScope/Insecta> .

<https://linked.data.gov.au/dataset/bdr/00000000-0000-0000-0000-000000000000/attribution/CSIRO/principalInvestigator> a prov:Attribution ;
prov:agent <https://linked.data.gov.au/dataset/bdr/orgs/CSIRO> ;
prov:agent <https://linked.data.gov.au/dataset/bdr/org/CSIRO> ;
prov:hadRole <https://linked.data.gov.au/def/data-roles/principalInvestigator> .

<https://linked.data.gov.au/dataset/bdr/00000000-0000-0000-0000-000000000000/attribution/NSW-Department-of-Planning-Industry-and-Environment/principalInvestigator> a prov:Attribution ;
prov:agent <https://linked.data.gov.au/dataset/bdr/orgs/NSW-Department-of-Planning-Industry-and-Environment> ;
prov:agent <https://linked.data.gov.au/dataset/bdr/org/NSW-Department-of-Planning-Industry-and-Environment> ;
prov:hadRole <https://linked.data.gov.au/def/data-roles/principalInvestigator> .

<https://linked.data.gov.au/dataset/bdr/00000000-0000-0000-0000-000000000000/bdr-cv/attribute/targetTaxonomicScope/Coleoptera> a skos:Concept ;
Expand Down Expand Up @@ -124,10 +124,10 @@
rdfs:label "Insecta" ;
rdf:value <https://linked.data.gov.au/dataset/bdr/00000000-0000-0000-0000-000000000000/bdr-cv/attribute/targetTaxonomicScope/Insecta> .

<https://linked.data.gov.au/dataset/bdr/orgs/CSIRO> a prov:Agent ;
<https://linked.data.gov.au/dataset/bdr/org/CSIRO> a prov:Agent ;
schema:name "CSIRO" .

<https://linked.data.gov.au/dataset/bdr/orgs/NSW-Department-of-Planning-Industry-and-Environment> a prov:Agent ;
<https://linked.data.gov.au/dataset/bdr/org/NSW-Department-of-Planning-Industry-and-Environment> a prov:Agent ;
schema:name "NSW Department of Planning, Industry and Environment" .

<https://linked.data.gov.au/dataset/bdr/00000000-0000-0000-0000-000000000000/Survey/COL1> a tern:Survey ;
Expand Down
2 changes: 1 addition & 1 deletion abis_mapping/templates/survey_metadata_v3/mapping.py
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Original file line number Diff line number Diff line change
Expand Up @@ -224,7 +224,7 @@ def apply_mapping_row(
name=raw_org,
datatype=utils.iri_patterns.datatype_iri("surveyID", raw_org),
attribution=utils.iri_patterns.attribution_iri(base_iri, "principalInvestigator", raw_org),
agent=utils.iri_patterns.agent_iri(raw_org),
agent=utils.iri_patterns.agent_iri("org", raw_org),
)
)

Expand Down
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