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feat: approved iwc workflow shortlist and annotations (#206)
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,46 +1,40 @@ | ||
| workflows: | ||
| # this list of workflows and their annotations are a wip and will be updated as i learn more | ||
| # about their status and the tools used, etc. | ||
| - trs_id: "#workflow/github.com/iwc-workflows/chipseq-pe/main" | ||
| - trs_id: "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/chipseq-pe/main/versions/v0.12" | ||
| type: "REGULATION" | ||
| description: "Workflows for the analysis of ChIP-seq, ATAC-Seq, and beyond." | ||
| ploidy: "any" | ||
|
|
||
| - trs_id: "#workflow/github.com/iwc-workflows/chipseq-sr/main" | ||
| - trs_id: "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/chipseq-sr/main/versions/v0.12" | ||
| type: "REGULATION" | ||
| description: "Workflows for the analysis of ChIP-seq, ATAC-Seq, and beyond." | ||
| ploidy: "any" | ||
|
|
||
| - trs_id: "#workflow/github.com/iwc-workflows/rnaseq-pe/main" | ||
| - trs_id: "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/rnaseq-pe/main/versions/v1.2" | ||
| type: "TRANSCRIPTOMICS" | ||
| description: "Analyze bulk or single-cell RNA seq data using a variety of approaches." | ||
| ploidy: "any" | ||
|
|
||
| - trs_id: "#workflow/github.com/iwc-workflows/rnaseq-sr/main" | ||
| - trs_id: "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/rnaseq-sr/main/versions/v1.2" | ||
| type: "TRANSCRIPTOMICS" | ||
| description: "Analyze bulk or single-cell RNA seq data using a variety of approaches." | ||
| ploidy: "any" | ||
|
|
||
| - trs_id: "#workflow/github.com/iwc-workflows/haploid-variant-calling-wgs-pe/main" | ||
| - trs_id: "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/haploid-variant-calling-wgs-pe/main/versions/v0.1" | ||
| type: "VARIANT_CALLING" | ||
| description: "Identify nucleotide polymorphisms and short indels from Illumina and Element data." | ||
| ploidy: "haploid" | ||
|
|
||
| # im starting to wonder looking at this if the default for ploidy shouldnt be any | ||
| # maybe it could be multivalued [haploid, diploid].. might not matter depending on ui | ||
| - trs_id: "#workflow/github.com/iwc-workflows/generic-variant-calling-wgs-pe/main" | ||
| - trs_id: "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/generic-variant-calling-wgs-pe/main/versions/v0.1.1" | ||
| type: "VARIANT_CALLING" | ||
| description: "Identify nucleotide polymorphisms and short indels from Illumina and Element data." | ||
| ploidy: "any" | ||
| ploidy: "haploid" | ||
|
|
||
| - trs_id: "#workflow/github.com/iwc-workflows/assembly-with-flye/main" | ||
| - trs_id: "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/assembly-with-flye/main/versions/v0.2" | ||
| type: "ASSEMBLY" | ||
| description: "Best practices for assembly of prokaryotic and eukaryotic genomes sequenced with a variety of technologies." | ||
| description: "Assemble prokaryotic and eukaryotic genomes sequenced with a variety of technologies." | ||
| ploidy: "any" | ||
|
|
||
| # idk yet what makes this specific to bacteria, or if it can be easily generalized | ||
| # but we may need a new annotation once i figure it out | ||
| - trs_id: "#workflow/github.com/iwc-workflows/bacterial-genome-assembly/main" | ||
| - trs_id: "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/bacterial-genome-assembly/main/versions/v1.1.5" | ||
| type: "ASSEMBLY" | ||
| description: "Best practices for assembly of prokaryotic and eukaryotic genomes sequenced with a variety of technologies." | ||
| description: "Assemble prokaryotic and eukaryotic genomes sequenced with a variety of technologies." | ||
| ploidy: "any" |