Merge pull request #36 from arenasg/main

update publications
gf-dcc · Feb 4, 2025 · 78e5d22 · 78e5d22
2 parents d29bcc7 + 012bf74
commit 78e5d22
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Showing 8 changed files with 38 additions and 14 deletions.
diff --git a/...ies-to-track-and-prevent-breast-cancer-development-in-brca-mutation-carriers.md b/...ies-to-track-and-prevent-breast-cancer-development-in-brca-mutation-carriers.md
@@ -35,7 +35,7 @@ data:
 {% comment %}
   'publicationList' should be a comma-delineated string of publication file names
 {% endcomment %}
-{% assign publicationList = 'a-human-breast-atlas-integrating-single-cell-proteomics-and-transcriptomics.md' %}
+{% assign publicationList = 'a-human-breast-atlas-integrating-single-cell-proteomics-and-transcriptomics,luminal-breast-epithelial-cells-BRCA1-BRCA2-mutation-carriers-noncarriers-harbor-common-breast-cancer-copy-number-alterations' %}
 
 {% include pub-list.html list=publicationList %}
 

diff --git a/_data/announcements.yml b/_data/announcements.yml
@@ -1,5 +1,5 @@
 publications_software:
-  - title: "Multimodal Spatial Profiling Reveals Immune Suppression and Microenvironment Remodeling in Fallopian Tube Precursors to High-Grade Serous Ovarian Carcinoma."
+  - title: "Multimodal spatial profiling reveals immune suppression and microenvironment remodeling in fallopian tube precursors to high-grade serous ovarian carcinoma."
     author: "Kader et al"
     year: 2024
     publication: "Cancer Discovery"
@@ -11,12 +11,19 @@ publications_software:
     link: "https://doi.org/10.1158/2159-8290.CD-24-1366"
     label: Publication  # [Publication|Software|Method]
     target: "_blank"  # [_self|_blank]
+  - title: "Luminal breast epithelial cells of BRCA1 or BRCA2 mutation carriers and noncarriers harbor common breast cancer copy number alterations."
+    author: "Williams et al."
+    year: 2024
+    publication: "Nature Genetics"
+    image: "publications/luminal-breast-epithelial-cells-BRCA1-BRCA2-mutation-carriers-noncarriers-harbor-common-breast-cancer-copy-number-alterations.jpg"
+    link: https://doi.org/10.1038/s41588-024-01988-0
+    label: Publication  # [Publication|Software|Method]
+    target: "_self"  # [_self|_blank]
   - title: 'H2Bub1 loss is an early contributor to clear cell ovarian cancer progression.'
     author: "Ferrari et al"
     year: 2023
     publication: JCI Insight
     contributors: 'Ferrari AJ, Rawat P, Rendulich HS, Annapragada AV, Kinose Y, Zhang X, Devins K, Budina A, Scharpf RB, Mitchell MA, Tanyi JL, Morgan MA, Schwartz LE, Soong TR, Velculescu VE, Drapkin R.'
-    publication: JCI Insight.
     image: publications/H2Bub1-loss-clear-cell-ovarian-cancer-progression.jpg
     link: https://insight.jci.org/articles/view/164995
     label: Publication  # [Publication|Software|Method]
@@ -30,14 +37,7 @@ publications_software:
     link: "https://gf-dcc.github.io/info-website/atlas-datasets/gray-rosenbluth-selfors-2022/"
     label: Publication  # [Publication|Software|Method]
     target: "_blank"  # [_self|_blank]
-  - title: "Aneuploidy and a deregulated DNA damage response suggest haploinsufficiency in breast tissues of BRCA2 mutation carriers."
-    author: "Karaayvaz-Yildirim et al."
-    year: 2020
-    publication: "Science Advances"
-    image: "publications/aneuploidy-and-deregulated-DNA damage-response-suggest-haploinsufficiency.jpeg"
-    link: https://doi.org/10.1126/sciadv.aay2611
-    label: Publication  # [Publication|Software|Method]
-    target: "_self"  # [_self|_blank]
+
 news_press:
   - title: "Understanding the earliest stages of ovarian cancer."
     author: "HMS News"

diff --git a/...H2Bub1-loss-is-an-early-contributor-to-clear-cell-ovarian-cancer-progression.md b/...H2Bub1-loss-is-an-early-contributor-to-clear-cell-ovarian-cancer-progression.md
@@ -13,6 +13,7 @@ date: 2023-06-22
 
 minerva_link:
 publication_link: https://doi.org/10.1172/jci.insight.164995
+pubmed_link: https://pubmed.ncbi.nlm.nih.gov/37345659/
 preprint_link:
 pdf_link:
 show_page_link: false

diff --git a/.../a-human-breast-atlas-integrating-single-cell-proteomics-and-transcriptomics.md b/.../a-human-breast-atlas-integrating-single-cell-proteomics-and-transcriptomics.md
@@ -13,8 +13,9 @@ date: 2023-07-01
 
 minerva_link:
 dataset_link: /atlas-datasets/gray-rosenbluth-selfors-2022
-cellxgene_link: https://cellxgene.cziscience.com/collections/99f1515b-46a2-4bc4-94c3-f62659dc1eb4
+pubmed_link: https://pubmed.ncbi.nlm.nih.gov/35617956/
 broad_portal_link: https://singlecell.broadinstitute.org/single_cell/study/SCP1731/a-human-breast-atlas-integrating-single-cell-proteomics-and-transcriptomics
+cellxgene_link: https://cellxgene.cziscience.com/collections/99f1515b-46a2-4bc4-94c3-f62659dc1eb4
 preprint_link:
 pdf_link:
 show_page_link: false

diff --git a/...ns/aneuploidy-and-deregulated-DNA damage-response-suggest-haploinsufficiency.md b/...ns/aneuploidy-and-deregulated-DNA damage-response-suggest-haploinsufficiency.md
@@ -13,6 +13,7 @@ date: 2020-06-22
 
 minerva_link:
 preprint_link:
+pubmed_link: https://pubmed.ncbi.nlm.nih.gov/32064343/
 pdf_link:
 show_page_link: false
 ---
diff --git a/...ion-carriers-noncarriers-harbor-common-breast-cancer-copy-number-alterations.md b/...ion-carriers-noncarriers-harbor-common-breast-cancer-copy-number-alterations.md
@@ -0,0 +1,20 @@
+---
+title: 'Luminal breast epithelial cells of BRCA1 or BRCA2 mutation carriers and noncarriers harbor common breast cancer copy number alterations.'
+contributors: 'Williams MJ, Oliphant MUJ, Au V, Liu C, Baril C, O’Flanagan C, Lai D, Beatty S, ... Aparicio, S.'
+publication: Nature Genetics. 2024 Nov 20; 56(12), 2753–2762.
+publication_link: https://doi.org/10.1038/s41588-024-01988-0
+pmcid: PMC11631757
+
+image: publications/luminal-breast-epithelial-cells-BRCA1-BRCA2-mutation-carriers-noncarriers-harbor-common-breast-cancer-copy-number-alterations.jpg
+
+group: publications
+
+date: 2024-11-24
+
+minerva_link:
+dataset_link:
+preprint_link:
+pubmed_link: https://pubmed.ncbi.nlm.nih.gov/39567747/
+pdf_link:
+show_page_link: false
+---
diff --git a/...ent-remodeling-fallopian-tube-precursors-high-grade-serous-ovarian-carcinoma.md b/...ent-remodeling-fallopian-tube-precursors-high-grade-serous-ovarian-carcinoma.md
@@ -1,7 +1,7 @@
 ---
-title: 'Multimodal Spatial Profiling Reveals Immune Suppression and Microenvironment Remodeling in Fallopian Tube Precursors to High-Grade Serous Ovarian Carcinoma'
+title: 'Multimodal spatial profiling reveals immune suppression and microenvironment remodeling in fallopian tube precursors to high-grade serous ovarian carcinoma'
 contributors: 'Kader T, Lin J-R, Hug C, Coy S, Chen Y-A, de Bruijn I, Shih N, Jung, E, ... Santagata S'
-publication: Cancer Discovery. 2024 Dec 20. 
+publication: Cancer Discovery. 2024 Dec 20.
 publication_link: https://doi.org/10.1158/2159-8290.CD-24-1366
 pmcid: 39704522
 
@@ -13,6 +13,7 @@ date: 2024-12-20
 
 cbioportal_link: https://www.cbioportal.org/study/summary?id=ovary_geomx_gray_foundation_2024
 dataset_link: /atlas-datasets/kader-lin-hug-2024
+pubmed_link: https://pubmed.ncbi.nlm.nih.gov/39704522/
 preprint_link:
 pdf_link:
 show_page_link: false

diff --git a/...on-carriers-noncarriers-harbor-common-breast-cancer-copy-number-alterations.jpg b/...on-carriers-noncarriers-harbor-common-breast-cancer-copy-number-alterations.jpg