Add python 3.13 support

.github/workflows/release.yaml

@@ -26,11 +26,10 @@ jobs:
       uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
       with:
         python-version: 3.12
-    - name: Set up Python environment
-      uses: glotzerlab/workflows/setup-uv@5cfac9da9cb78e16ae97a9119b6fd13c1c2d6f5e # 0.1.0
-      with:
-        lockfile: ".github/workflows/requirements-build.txt"
-
+    - name: Install build dependencies
+      run: |
+        python --version
+        python -m pip install --progress-bar off build
     - name: Build wheel
       run: python3 -m build --outdir dist/ .
 

.github/workflows/requirements-test.in

@@ -1,5 +1,3 @@
-coverage == 7.5.3
-numpy == 2.0.0
-pytest == 8.2.2
-pytest-cov == 5.0.0
-scipy == 1.13.1
+numpy
+pytest
+scipy

.github/workflows/requirements3.10.txt

@@ -0,0 +1,20 @@
+# This file was autogenerated by uv via the following command:
+#    uv pip compile requirements-test.in --python-version 3.10 --python-platform linux --no-build
+exceptiongroup==1.2.2
+    # via pytest
+iniconfig==2.0.0
+    # via pytest
+numpy==2.1.2
+    # via
+    #   -r requirements-test.in
+    #   scipy
+packaging==24.1
+    # via pytest
+pluggy==1.5.0
+    # via pytest
+pytest==8.3.3
+    # via -r requirements-test.in
+scipy==1.14.1
+    # via -r requirements-test.in
+tomli==2.0.2
+    # via pytest

.github/workflows/requirements3.11.txt

@@ -0,0 +1,16 @@
+# This file was autogenerated by uv via the following command:
+#    uv pip compile requirements-test.in --python-version 3.11 --python-platform linux --no-build
+iniconfig==2.0.0
+    # via pytest
+numpy==2.1.2
+    # via
+    #   -r requirements-test.in
+    #   scipy
+packaging==24.1
+    # via pytest
+pluggy==1.5.0
+    # via pytest
+pytest==8.3.3
+    # via -r requirements-test.in
+scipy==1.14.1
+    # via -r requirements-test.in

.github/workflows/requirements3.12.txt

@@ -0,0 +1,16 @@
+# This file was autogenerated by uv via the following command:
+#    uv pip compile requirements-test.in --python-version 3.12 --python-platform linux --no-build
+iniconfig==2.0.0
+    # via pytest
+numpy==2.1.2
+    # via
+    #   -r requirements-test.in
+    #   scipy
+packaging==24.1
+    # via pytest
+pluggy==1.5.0
+    # via pytest
+pytest==8.3.3
+    # via -r requirements-test.in
+scipy==1.14.1
+    # via -r requirements-test.in

.github/workflows/requirements3.13.txt

@@ -0,0 +1,16 @@
+# This file was autogenerated by uv via the following command:
+#    uv pip compile requirements-test.in --python-version 3.13 --python-platform linux --no-build
+iniconfig==2.0.0
+    # via pytest
+numpy==2.1.2
+    # via
+    #   -r requirements-test.in
+    #   scipy
+packaging==24.1
+    # via pytest
+pluggy==1.5.0
+    # via pytest
+pytest==8.3.3
+    # via -r requirements-test.in
+scipy==1.14.1
+    # via -r requirements-test.in

.github/workflows/requirements-test.txt → .github/workflows/requirements3.9.txt

@@ -1,30 +1,20 @@
 # This file was autogenerated by uv via the following command:
 #    uv pip compile requirements-test.in --python-version 3.9 --python-platform linux --no-build
-coverage==7.5.3
-    # via
-    #   -r requirements-test.in
-    #   pytest-cov
-exceptiongroup==1.2.1
+exceptiongroup==1.2.2
     # via pytest
 iniconfig==2.0.0
     # via pytest
-numpy==2.0.0
+numpy==2.0.2
     # via
     #   -r requirements-test.in
     #   scipy
 packaging==24.1
     # via pytest
 pluggy==1.5.0
     # via pytest
-pytest==8.2.2
-    # via
-    #   -r requirements-test.in
-    #   pytest-cov
-pytest-cov==5.0.0
+pytest==8.3.3
     # via -r requirements-test.in
 scipy==1.13.1
     # via -r requirements-test.in
-tomli==2.0.1
-    # via
-    #   coverage
-    #   pytest
+tomli==2.0.2
+    # via pytest

.github/workflows/unit_test.yaml

@@ -24,7 +24,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python: ["3.9", "3.10", "3.11", "3.12"]
+        python: ["3.9", "3.10", "3.11", "3.12", "3.13"]
 
     steps:
     - name: Checkout
@@ -34,9 +34,10 @@ jobs:
       with:
         python-version: ${{ matrix.python }}
     - name: Set up Python environment
-      uses: glotzerlab/workflows/setup-uv@5cfac9da9cb78e16ae97a9119b6fd13c1c2d6f5e # 0.1.0
+      uses: glotzerlab/workflows/setup-uv@33f1cd458d4d39d0101cfa67d13dd3a9e118eefd
       with:
-        lockfile: ".github/workflows/requirements-test.txt"
+        only-binary: ":none:"
+        lockfile: ".github/workflows/requirements${{matrix.python}}.txt"
     - name: Run tests
       run: python3 -m pytest -v
 

README.rst

@@ -6,19 +6,13 @@ rowan
     :local:
 
 |ReadTheDocs|
-|CircleCI|
-|Codecov|
 |PyPI|
 |conda-forge|
 |Zenodo|
 |JOSS|
 
 .. |ReadTheDocs| image:: https://readthedocs.org/projects/rowan/badge/?version=latest
     :target: http://rowan.readthedocs.io/en/latest/?badge=latest
-.. |CircleCI| image:: https://circleci.com/gh/glotzerlab/rowan.svg?style=svg
-    :target: https://circleci.com/gh/glotzerlab/rowan
-.. |Codecov| image:: https://codecov.io/gh/glotzerlab/rowan/branch/master/graph/badge.svg
-    :target: https://codecov.io/gh/glotzerlab/rowan
 .. |PyPI| image:: https://img.shields.io/pypi/v/rowan.svg
     :target: https://pypi.org/project/rowan/
 .. |conda-forge| image:: https://img.shields.io/conda/vn/conda-forge/rowan.svg
@@ -130,17 +124,6 @@ To run the packaged unit tests, execute the following line from the root of the
 
     python -m unittest discover tests
 
-To check test coverage, make sure the coverage module is installed:
-
-.. code-block:: bash
-
-    pip install coverage
-
-and then run the packaged unit tests with the coverage module:
-
-.. code-block:: bash
-
-    coverage run -m unittest discover tests
 
 Running Benchmarks
 ------------------

doc/conf.py

@@ -38,7 +38,6 @@
     "sphinx.ext.intersphinx",
     "sphinx.ext.doctest",
     "sphinx.ext.todo",
-    "sphinx.ext.coverage",
     "sphinx.ext.mathjax",
 ]