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Bump the pip-version group with 6 updates #69

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Bumps the pip-version group with 6 updates:

Package From To
numpy 2.0.1 2.2.1
pymongo 4.8.0 4.10.1
redis 5.0.8 5.2.1
zarr 2.18.2 2.18.4
coverage 7.6.0 7.6.10
pytest 8.3.2 8.3.4

Updates numpy from 2.0.1 to 2.2.1

Release notes

Sourced from numpy's releases.

2.2.1 (DEC 21, 2024)

NumPy 2.2.1 Release Notes

NumPy 2.2.1 is a patch release following 2.2.0. It fixes bugs found after the 2.2.0 release and has several maintenance pins to work around upstream changes.

There was some breakage in downstream projects following the 2.2.0 release due to updates to NumPy typing. Because of problems due to MyPy defects, we recommend using basedpyright for type checking, it can be installed from PyPI. The Pylance extension for Visual Studio Code is also based on Pyright. Problems that persist when using basedpyright should be reported as issues on the NumPy github site.

This release supports Python 3.10-3.13.

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Joren Hammudoglu
  • Matti Picus
  • Nathan Goldbaum
  • Peter Hawkins
  • Simon Altrogge
  • Thomas A Caswell
  • Warren Weckesser
  • Yang Wang +

Pull requests merged

A total of 12 pull requests were merged for this release.

  • #27935: MAINT: Prepare 2.2.x for further development
  • #27950: TEST: cleanups
  • #27958: BUG: fix use-after-free error in npy_hashtable.cpp (#27955)
  • #27959: BLD: add missing include
  • #27982: BUG:fix compile error libatomic link test to meson.build
  • #27990: TYP: Fix falsely rejected value types in ndarray.__setitem__
  • #27991: MAINT: Don't wrap #include <Python.h> with extern "C"
  • #27993: BUG: Fix segfault in stringdtype lexsort
  • #28006: MAINT: random: Tweak module code in mtrand.pyx to fix a Cython...
  • #28007: BUG: Cython API was missing NPY_UINTP.
  • #28021: CI: pin scipy-doctest to 1.5.1
  • #28044: TYP: allow None in operand sequence of nditer

Checksums

... (truncated)

Changelog

Sourced from numpy's changelog.

This is a walkthrough of the NumPy 2.1.0 release on Linux, modified for building with GitHub Actions and cibuildwheels and uploading to the anaconda.org staging repository for NumPy <https://anaconda.org/multibuild-wheels-staging/numpy>_. The commands can be copied into the command line, but be sure to replace 2.1.0 by the correct version. This should be read together with the :ref:general release guide <prepare_release>.

Facility preparation

Before beginning to make a release, use the requirements/*_requirements.txt files to ensure that you have the needed software. Most software can be installed with pip, but some will require apt-get, dnf, or whatever your system uses for software. You will also need a GitHub personal access token (PAT) to push the documentation. There are a few ways to streamline things:

  • Git can be set up to use a keyring to store your GitHub personal access token. Search online for the details.
  • You can use the keyring app to store the PyPI password for twine. See the online twine documentation for details.

Prior to release

Add/drop Python versions

When adding or dropping Python versions, three files need to be edited:

  • .github/workflows/wheels.yml # for github cibuildwheel
  • tools/ci/cirrus_wheels.yml # for cibuildwheel aarch64/arm64 builds
  • pyproject.toml # for classifier and minimum version check.

Make these changes in an ordinary PR against main and backport if necessary. Add [wheel build] at the end of the title line of the commit summary so that wheel builds will be run to test the changes. We currently release wheels for new Python versions after the first Python rc once manylinux and cibuildwheel support it. For Python 3.11 we were able to release within a week of the rc1 announcement.

Backport pull requests

Changes that have been marked for this release must be backported to the maintenance/2.1.x branch.

Update 2.1.0 milestones

... (truncated)

Commits
  • 7469245 Merge pull request #28047 from charris/prepare-2.2.1
  • acb051e REL: Prepare for the NumPy 2.2.1 release [wheel build]
  • 28a091a Merge pull request #28044 from charris/backport-28039
  • 723605b TST: Add test for allowing None in operand sequence passed to nditer
  • 554739e TYP: allow None in operand sequence of nditer
  • 31bc4c8 Merge pull request #28021 from charris/backport-28020
  • 32f52a3 CI: pin scipy-doctest to 1.5.1 (#28020)
  • 6219aeb Merge pull request #28007 from charris/backport-28005
  • eb7071c Merge pull request #28006 from charris/backport-28003
  • 4f82c32 BUG: Cython API was missing NPY_UINTP.
  • Additional commits viewable in compare view

Updates pymongo from 4.8.0 to 4.10.1

Release notes

Sourced from pymongo's releases.

PyMongo 4.10.1

Community notes: https://www.mongodb.com/community/forums/t/pymongo-4-10-1-released/299573

PyMongo 4.10.0

Community notes: https://www.mongodb.com/community/forums/t/pymongo-4-10-0-released/299474

PyMongo 4.9.2

  • Fixed a bug where pymongo.asynchronous.mongo_client.AsyncMongoClient could deadlock.
  • Fixed a bug where PyMongo could fail to import on Windows if asyncio is misconfigured.
  • Fixed a bug where pymongo.results.UpdateResult.did_upsert would raise a TypeError.

PyMongo 4.9.1

Community notes: https://www.mongodb.com/community/forums/t/pymongo-4-9-released/297833

Changelog

Sourced from pymongo's changelog.

Changes in Version 4.10.1 (2024/10/01)

Version 4.10.1 is a bug fix release.

  • Fixed a bug where :meth:~pymongo.results.UpdateResult.did_upsert would raise a TypeError.
  • Fixed Binary BSON subtype (9) support on big-endian operating systems (such as zSeries).

Issues Resolved ...............

See the PyMongo 4.10.1 release notes in JIRA_ for the list of resolved issues in this release.

.. _PyMongo 4.10.1 release notes in JIRA: https://jira.mongodb.org/secure/ReleaseNote.jspa?projectId=10004&version=40788

Changes in Version 4.10.0 (2024/09/30)

  • Added provisional (BETA) support for a new Binary BSON subtype (9) used for efficient storage and retrieval of vectors: densely packed arrays of numbers, all of the same type. This includes new methods :meth:~bson.binary.Binary.from_vector and :meth:~bson.binary.Binary.as_vector.
  • Added C extension use to client metadata, for example: {"driver": {"name": "PyMongo|c", "version": "4.10.0"}, ...}
  • Fixed a bug where :class:~pymongo.asynchronous.mongo_client.AsyncMongoClient could deadlock.
  • Fixed a bug where PyMongo could fail to import on Windows if asyncio is misconfigured.

Issues Resolved ...............

See the PyMongo 4.10 release notes in JIRA_ for the list of resolved issues in this release.

.. _PyMongo 4.10 release notes in JIRA: https://jira.mongodb.org/secure/ReleaseNote.jspa?projectId=10004&version=40553

Changes in Version 4.9.2 (2024/10/02)

  • Fixed a bug where :class:~pymongo.asynchronous.mongo_client.AsyncMongoClient could deadlock.
  • Fixed a bug where PyMongo could fail to import on Windows if asyncio is misconfigured.
  • Fixed a bug where :meth:~pymongo.results.UpdateResult.did_upsert would raise a TypeError.

Issues Resolved ...............

See the PyMongo 4.9.2 release notes in JIRA_ for the list of resolved issues in this release.

.. _PyMongo 4.9.2 release notes in JIRA: https://jira.mongodb.org/secure/ReleaseNote.jspa?projectId=10004&version=40732

... (truncated)

Commits
  • 77cd7ab BUMP 4.10.1
  • 1c28430 PYTHON-4808 Add changelog for 4.10.1 (#1890)
  • 7848feb PYTHON-4786 - Fix UpdateResult.did_upsert TypeError (#1878)
  • 0279407 PYTHON-4806 Fix expected metadata in mockupdb tests (#1888)
  • 7fbeca9 [PYTHON-4803] Big endian fix for binary bson vectors (#1885)
  • bfba548 PYTHON-4789 Migrate test_retryable_reads.py to async (#1877)
  • 8791aa0 PYTHON-4790 Migrate test_retryable_writes.py to async (#1876)
  • c0f7810 BUMP 4.11.0.dev0
  • 4713afa BUMP 4.10.0
  • ae6cfd6 [DRIVERS-2926] [PYTHON-4577] BSON Binary Vector Subtype Support (#1813)
  • Additional commits viewable in compare view

Updates redis from 5.0.8 to 5.2.1

Release notes

Sourced from redis's releases.

5.2.1

Changes

🐛 Bug Fixes

  • Fixed unsecured tempfile.mktemp() command usage (#3446)
  • Fixed bug with SLOWLOG GET response parsing on Redis Software (#3441)
  • Fixed issue with invoking _close() on closed event loop (#3438)

🧰 Maintenance

  • Migrate test infrastructure to new custom docker images (#3415)
  • Fixed flacky test with HEXPIREAT command (#3437)

Contributors

We'd like to thank all the contributors who worked on this release!

@​IlianIliev @​uglide @​vladvildanov @​teodorfn @​akx

5.2.0

Changes

🚀 New Features

  • Extend AggregateRequest with scorer argument (#3409)

🧰 Maintenance

  • Pin pytest-profiling version due to the bug (#3417)

Contributors

We'd like to thank all the contributors who worked on this release!

@​uglide @​rbs333 @​vladvildanov @​dwdougherty

5.1.1

Changes

5.1.1

🐛 Bug Fixes

  • Fixed return type for Redis Set commands to be Set instead of List (#3399)
  • Fixed bug with partial Hiredis availability (#3400)
  • Fixed bug with async pipeline and cluster fails with some commands (#3402)

5.1.0

🚀 New Features

... (truncated)

Commits

Updates zarr from 2.18.2 to 2.18.4

Release notes

Sourced from zarr's releases.

v2.18.4

What's Changed

New Contributors

Full Changelog: zarr-developers/zarr-python@v2.18.3...v2.18.4

v2.18.3

What's Changed

Full Changelog: zarr-developers/zarr-python@v2.18.2...v2.18.3

Changelog

Sourced from zarr's changelog.

2.18.4

Enhancements

* Added testing on Python 3.13.

Maintenance


* Dropped support for Python 3.10.
  By :user:`David Stansby &lt;dstansby&gt;` (:issue:`2344`).
* Removed testing for compatibility with the ``bsddb3`` package.
  ``bsddb3`` was last released four years ago, and should still work with
  ``zarr-python`` if you can install it, but to reduce our maintenance
  burden we will no longer run our compatibility tests for it.
  By :user:`David Stansby &lt;dstansby&gt;` (:issue:`2344`).
* Excluded versions 0.14.0 and 0.14.1 of numcodecs, due to a bug in the implementation of
  the Delta filter (see https://github.com/zarr-developers/numcodecs/issues/653 for more information).
  By :user:`David Stansby &lt;dstansby&gt;` (:issue:`2544`).

Deprecations

</code></pre>

<p>.. _release_2.18.3:</p>

<h2>2.18.3</h2>

<p>Enhancements</p>

<pre><code>* Added support for creating a copy of data when converting a zarr.Array

to a numpy array.

By :user:David Stansby &amp;lt;dstansby&amp;gt; (:issue:2106) and

:user:Joe Hamman &amp;lt;jhamman&amp;gt; (:issue:2123).


Maintenance




    

  • 

    Removed support for Python 3.9.
By :user:David Stansby &lt;dstansby&gt; (:issue:2074).
    

    • 

  • 

    Fix a regression when using orthogonal indexing with a scalar.
By :user:Deepak Cherian &lt;dcherian&gt; :issue:1931
    

    • 

  • 

    Added compatibility with NumPy 2.1.
By :user:David Stansby &lt;dstansby&gt;
    

    • 

  • 

    Bump minimum NumPy version to 1.24.
:user:Joe Hamman &lt;jhamman&gt; (:issue:2127).
    

    • 



Deprecations
</tr></table>

... (truncated)

Commits

Updates coverage from 7.6.0 to 7.6.10

Changelog

Sourced from coverage's changelog.

Version 7.6.10 — 2024-12-26

  • Fix: some descriptions of missing branches in HTML and LCOV reports were incorrect when multi-line statements were involved (issue 1874_ and issue 1875_). These are now fixed.

  • Fix: Python 3.14 defers evaluation of annotations <pep649_>_ by moving them into separate code objects. That code is rarely executed, so coverage.py would mark them as missing, as reported in issue 1908_. Now they are ignored by coverage automatically.

  • Fixed an obscure and mysterious problem on PyPy 3.10 seemingly involving mocks, imports, and trace functions: issue 1902_. To be honest, I don't understand the problem or the solution, but git bisect helped find it, and now it's fixed.

  • Docs: re-wrote the :ref:subprocess page to put multiprocessing first and to highlight the correct use of :class:multiprocessing.Pool <python:multiprocessing.pool.Pool>.

.. _issue 1874: nedbat/coveragepy#1874 .. _issue 1875: nedbat/coveragepy#1875 .. _issue 1902: nedbat/coveragepy#1902 .. _issue 1908: nedbat/coveragepy#1908 .. _pep649: https://docs.python.org/3.14/whatsnew/3.14.html#pep-649-deferred-evaluation-of-annotations

.. _changes_7-6-9:

Version 7.6.9 — 2024-12-06

  • Fix: Tomas Uribe fixed <pull 1901_>_ a performance problem in the XML report. Large code bases should produce XML reports much faster now.

.. _pull 1901: nedbat/coveragepy#1901

.. _changes_7-6-8:

Version 7.6.8 — 2024-11-23

  • Fix: the LCOV report code assumed that a branch line that took no branches meant that the entire line was unexecuted. This isn't true in a few cases: the line might always raise an exception, or might have been optimized away. Fixes issue 1896_.

  • Fix: similarly, the HTML report will now explain that a line that jumps to

... (truncated)

Commits
  • f0dcf65 docs: sample HTML for 7.6.10
  • 0f26f35 docs: prep for 7.6.10
  • 81c5e43 docs: rewrite the subprocess page
  • 878410c chore: make doc_upgrade
  • f1d320d chore: make upgrade
  • 67f1440 debug: this condition is never true. really?
  • c85eaba fix: multi-line statements no longer confuse branch target descriptions. #187...
  • 73e58fa refactor: clarify the code that fixes with-statement exits
  • e16c9cc typo: backslask
  • 865fd7f chore: bump the action-dependencies group with 4 updates (#1909)
  • Additional commits viewable in compare view

Updates pytest from 8.3.2 to 8.3.4

Release notes

Sourced from pytest's releases.

8.3.4

pytest 8.3.4 (2024-12-01)

Bug fixes

  • #12592: Fixed KeyError{.interpreted-text role="class"} crash when using --import-mode=importlib in a directory layout where a directory contains a child directory with the same name.

  • #12818: Assertion rewriting now preserves the source ranges of the original instructions, making it play well with tools that deal with the AST, like executing.

  • #12849: ANSI escape codes for colored output now handled correctly in pytest.fail{.interpreted-text role="func"} with [pytrace=False]{.title-ref}.

  • #9353: pytest.approx{.interpreted-text role="func"} now uses strict equality when given booleans.

Improved documentation

  • #10558: Fix ambiguous docstring of pytest.Config.getoption{.interpreted-text role="func"}.

  • #10829: Improve documentation on the current handling of the --basetemp option and its lack of retention functionality (temporary directory location and retention{.interpreted-text role="ref"}).

  • #12866: Improved cross-references concerning the recwarn{.interpreted-text role="fixture"} fixture.

  • #12966: Clarify filterwarnings{.interpreted-text role="ref"} docs on filter precedence/order when using multiple @pytest.mark.filterwarnings <pytest.mark.filterwarnings ref>{.interpreted-text role="ref"} marks.

Contributor-facing changes

  • #12497: Fixed two failing pdb-related tests on Python 3.13.

8.3.3

pytest 8.3.3 (2024-09-09)

Bug fixes

  • #12446: Avoid calling @property (and other instance descriptors) during fixture discovery -- by asottile{.interpreted-text role="user"}

  • #12659: Fixed the issue of not displaying assertion failure differences when using the parameter --import-mode=importlib in pytest>=8.1.

... (truncated)

Commits
  • 53f8b4e Update pypa/gh-action-pypi-publish to v1.12.2
  • 98dff36 Prepare release version 8.3.4
  • 1b474e2 approx: use exact comparison for bool (#13013)
  • b541721 docs: Fix wrong statement about sys.modules with importlib import mode (#1298...
  • 16cb87b pytest.fail: fix ANSI escape codes for colored output (#12959) (#12990)
  • be6bc81 Issue #12966 Clarify filterwarnings docs on precedence when using multiple ma...
  • 7aeb72b Improve docs on basetemp and retention (#12912) (#12928)
  • c875841 Merge pull request #12917 from pytest-dev/patchback/backports/8.3.x/ded1f44e5...
  • 6502816 Merge pull request #12913 from jakkdl/dontfailonbadpath
  • 52135b0 Merge pull request #12885 from The-Compiler/pdb-py311 (#12887)
  • Additional commits viewable in compare view

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@dependabot dependabot bot requested a review from a team as a code owner January 1, 2025 12:12
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jan 1, 2025
@dependabot dependabot bot requested a review from joaander January 1, 2025 12:12
@dependabot
Bump the pip-version group with 6 updates
fddd7ec 
Bumps the pip-version group with 6 updates:

| Package | From | To |
| --- | --- | --- |
| [numpy](https://github.com/numpy/numpy) | `2.0.1` | `2.2.1` |
| [pymongo](https://github.com/mongodb/mongo-python-driver) | `4.8.0` | `4.10.1` |
| [redis](https://github.com/redis/redis-py) | `5.0.8` | `5.2.1` |
| [zarr](https://github.com/zarr-developers/zarr-python) | `2.18.2` | `2.18.4` |
| [coverage](https://github.com/nedbat/coveragepy) | `7.6.0` | `7.6.10` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.3.2` | `8.3.4` |


Updates `numpy` from 2.0.1 to 2.2.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.2.1)

Updates `pymongo` from 4.8.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.8.0...4.10.1)

Updates `redis` from 5.0.8 to 5.2.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.8...v5.2.1)

Updates `zarr` from 2.18.2 to 2.18.4
- [Release notes](https://github.com/zarr-developers/zarr-python/releases)
- [Changelog](https://github.com/zarr-developers/zarr-python/blob/v2.18.4/docs/release.rst)
- [Commits](zarr-developers/zarr-python@v2.18.2...v2.18.4)

Updates `coverage` from 7.6.0 to 7.6.10
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@7.6.0...7.6.10)

Updates `pytest` from 8.3.2 to 8.3.4
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.4)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pip-version
- dependency-name: pymongo
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pip-version
- dependency-name: redis
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pip-version
- dependency-name: zarr
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-version
- dependency-name: coverage
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-version
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-version
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot-pip-main-pip-version-18cd5a8d54 branch from 695c808 to fddd7ec Compare January 6, 2025 15:34
@joaander joaander removed their request for review January 20, 2025 19:11
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