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ui.R
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shinyUI( tagList(fluidPage(
shinyjs::useShinyjs(),
withAnim(),
tags$head(includeCSS("www/theme.css")),
div(
id = "splashPage",
hidden(img(src = "logos/LandscapePlot_IPDGC_logo.png", id = "splashLogo"))
),
hidden(
div(id = "uiPage",
dashboardPagePlus(
title = "PD Genetic Landscape Plot", skin = "black",
dashboardHeaderPlus(
title = tagList(actionLink("wrapperLogo", span(img(src = "logos/LandscapePlot_IPDGC_logo.png", id = "wrapperLogo", width = "60%"),style="display: inline; position: relative; top: 0px; color: #0a3a87"))),
left_menu = tagList(
fluidRow(
column(
div(
#searchbar code in plot.js
searchInput("searchInputBar", placeholder = "rs114138760, PMVK, 1:154898185", btnSearch = icon("search"),btnReset = icon("remove"), width = "425px" )
),
width = 12
)
)
),
tags$li(class = "dropdown", actionBttn(
inputId = "download_button",
label = "Download Plot",
style = "material-flat",
color = "primary"
))
),
dashboardSidebar(
width = 400,
tabsetPanel(type = "tabs",
tabPanel("Data",
div(class="tabpanel",
boxPlus(
checkboxGroupInput(
inputId = "gwas_buttons",
label = ""
),
status = "primary",
solidHeader = T,
closable = F,
width = 12,
title = "GWAS",
footer = "Include variants from selected genome wide association studies (GWAS)."
),
boxPlus(
status = "primary",
solidHeader = T,
closable = F,
width = 12,
title = "Axes",
footer = div(uiOutput(outputId = "stats_output"),uiOutput(outputId = "y_stats_output")),
radioGroupButtons(
inputId = "population_input",
label = "X Axis Effect Allele Frequency:",
choices=c("")
),
checkboxInput(inputId = "log_x_input", label = "log scale x-axis",value=TRUE),
radioGroupButtons(
inputId = "y_input",
label = "Y Axis Values:",
choices = c("")
),
radioGroupButtons(
inputId = "y_study_input",
label = "Beta/Odds Ratio From:",
choices = c("")
),
checkboxInput(inputId = "log_y_input", label = "log scale y-axis",value=TRUE)
)
)
),
tabPanel("Display",
boxPlus(
status = "primary",
solidHeader = T,
closable = F,
width = 12,
title = "Annotation",
footer = "",
radioGroupButtons(
inputId = "annotation_input",
choices = c("")
)
),
boxPlus(
status = "primary",
solidHeader = T,
closable = F,
width = 12,
title = "Legend",
footer = "",
materialSwitch(
inputId = "legend_input",
label = "include legend",
value = FALSE,
status = "primary",
right = TRUE
)
),
boxPlus(
status = "primary",
solidHeader = T,
closable = F,
width = 12,
title = "Dimensions",
footer = "",
sliderInput("canvas_width", label = "canvas_width:",
min = 300, max = 2000, value = 1200, step =100),
sliderInput("canvas_height", label = "canvas_height:",
min = 300, max = 1000, value = 800, step =100)
),
boxPlus(
status = "primary",
solidHeader = T,
closable = F,
width = 12,
title = "Grouping",
footer = "Only color variants in a certain range.",
sliderInput("x_axis_range", label = "X Axis:",
min = 0, max = 1, value = c(0,1), step =0.025),
sliderInput("y_axis_range", label = "Y Axis:",
min = -100, max = 100, value = c(-100,100), step =0.025)
)
)
)
),
sidebar_fullCollapse = TRUE,
dashboardBody(
fluidRow(
column(width = 12, style = "overflow-x: scroll",
div(id="my_dataviz",style=("height:1000px"))
)
)
))
)
),
tags$script(src = "https://d3js.org/d3.v6.js"),
tags$script(src = "labeler.js"),
tags$script(src = "setup.js"),
tags$script(src = "plot.js")
)
))