Skip to content

Commit

Permalink
Update pVACvector error help text to mention new parameter
Browse files Browse the repository at this point in the history
  • Loading branch information
susannasiebert committed Feb 4, 2025
1 parent 167a408 commit 69e3441
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion pvactools/tools/pvacvector/run.py
Original file line number Diff line number Diff line change
Expand Up @@ -532,7 +532,7 @@ def main(args_input=sys.argv[1:]):
'A vaccine design using the parameters specified could not be found. Some options that you may want to consider:\n' +
'1) decreasing the acceptable junction binding score to allow more possible connections (-b parameter)\n' +
'2) using the "median" binding score instead of the "best" binding score for each junction, (best may be too conservative, -m parameter)\n' +
'3) if running with a percentile threshold set, either remove this parameter or reduce the acceptable threshold to allow more possible connections (--percentile-threshold parameter)\n' +
'3) if running with a percentile threshold set, either remove this parameter, reduce the acceptable threshold to allow more possible connections (--percentile-threshold parameter) or use the \'exploratory\' strategry (--percentile-threshold-strategy parameter)\n' +
'4) increase the number of peptides that can be excluded from the vector (--allow-n-peptide-exclusion parameter)'
)

Expand Down

0 comments on commit 69e3441

Please sign in to comment.