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Updated column tooltips #1189

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Updated column tooltips #1189

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3c00d06
updated column descriptions
ldhtnp Jan 31, 2025
1dd8d02
updated additional descriptions, modified gsub
ldhtnp Feb 6, 2025
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10 changes: 7 additions & 3 deletions pvactools/tools/pvacview/styling.R
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Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,7 @@ callback <- function(hla_count, score_mode) {
" 'Allele',",
" 'Pos - The one-based position of the start of the mutation within the epitope sequence. 0 if the start of the mutation is before the epitope (as can occur downstream of frameshift mutations).',",
" 'Prob Pos - Problematic positions within the best peptide.',",
" 'Num Included Peptides - The number of top-scoring, unique peptides included for review.',",
" 'Num Passing Peptides - The number of unique well-binding peptides for this mutation.',",
gsub("X", score_mode," 'IC50 MT - X IC50 binding affinity of the best-binding mutant epitope across all prediction algorithms used.', "),
" 'IC50 WT - IC50 binding affinity of the corresponding wildtype epitope.',",
Expand All @@ -31,10 +32,13 @@ callback <- function(hla_count, score_mode) {
" 'RNA Depth - Tumor RNA depth at this position.',",
" 'DNA VAF - Tumor DNA variant allele frequency (VAF) at this position.',",
" 'Tier - A tier suggesting the suitability of variants for use in vaccines.',",
" 'Eval - User-selected evaluation of neoantigen candidate. Options include: Accept, Reject, Review. (Default: Pending)'],",
" 'Ref Match - Indicates if the query sequence has a hit in the reference proteome.',",
" 'Acpt - Click the thumbs-up button to accept a neoantigen candidate.',",
" 'Rej - Click the thumbs-down button to reject a neoantigen candidate.',",
" 'Rev - Click the flag button to mark a neoantigen candidate for review.'],",
"header = table.columns().header();",
gsub("7", hla_count, "for (var i = 7; i-7 < tips.length; i++) {"),
gsub("7", hla_count, "$(header[i]).attr('title', tips[i-7]);"),
gsub("7", hla_count, "for (var i = 5; i-5 < tips.length; i++) {"),
gsub("7", hla_count, "$(header[i]).attr('title', tips[i-5]);"),
"}"
)
}
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