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Update 0008-02-01-QA_clustering.md
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ksinghal28 authored Apr 29, 2024
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Expand Up @@ -299,7 +299,7 @@ for (sample in sample_names) {

#### Remove low-quality cells based on the QC plots

Let's say we decide to remove all cells with gene counts greater than 1000 and mitochondrial percentages less than 12.
Let's say we decide to keep all cells with gene counts greater than 1000 and mitochondrial percentages less than 12.

We will mark cells that we want to keep. This `ifelse` function statement reads: if `percent.mt` is less than or equal to 12 we will mark it as TRUE to keep it, otherwise we will mark it as FALSE to filter it out.

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