More dependency upgrades: support for latest pymatgen and numpy#928

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ml-evs merged 5 commits intomainfrom ml-evs/deps

Mar 26, 2024

+266-381

Commits on Mar 26, 2024

update dependencies for ubuntu-latest/py3.10

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update dependencies for ubuntu-latest/py3.11

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update dependencies for ubuntu-latest/py3.9

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Handle deprecation of pymatgen Specie.from_string
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Cast columns to list for compatibility with numpy 1.26+
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