Merge pull request #25 from jonasutz/main

Cast binary images to uint8 before masking to suppress deprecation warning
haesleinhuepf · Sep 4, 2024 · a9be379 · a9be379
2 parents 83ae92f + aaf2cb7
commit a9be379
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/napari_simpleitk_image_processing/_simpleitk_image_processing.py b/src/napari_simpleitk_image_processing/_simpleitk_image_processing.py
@@ -513,7 +513,7 @@ def touching_objects_labeling(binary_image:"napari.types.LabelsData") -> "napari
                                                 useImageSpacing=False)
 
     ws = sitk.MorphologicalWatershed(distance_map, markWatershedLine=False, level=1)
-    labels = sitk.Mask(ws, sitk.Cast(binary_image, ws.GetPixelID()))
+    labels = sitk.Mask(ws, sitk.Cast(binary_image, sitk.sitkUInt8))
     return labels
 
 
@@ -543,7 +543,7 @@ def watershed_otsu_labeling(image:"napari.types.ImageData", spot_sigma: float =
     binary_otsu = sitk.OtsuThreshold(blurred_outline, 0, 1)
 
     ws = sitk.MorphologicalWatershed(blurred_spots, markWatershedLine=False, level=watershed_level)
-    labels = sitk.Mask(ws, sitk.Cast(binary_otsu, ws.GetPixelID()))
+    labels = sitk.Mask(ws, sitk.Cast(binary_otsu, sitk.sitkUInt8))
 
     return labels