A one-stop shop for all (most?) of your single cell fastq and bam QCing needs.
fastq_QC: contains a snakemake workflow to run fastqc, multiqc and fastqscreen to check for contamination in your fastq files, adapter or otherwise
WGS_BAM_QC: contains a snakemake workflow to run a number of single cell whole genome BAM library metrics to see if your DLP run worked or not. Most tools run are from GATK, though some are custom
scripts: contains a number of python scripts with helpful functions to run the above workflow, or plot their output
... better explanations to come on this README when my thesis writing is complete...