bamkit

Tools for common BAM file manipulations

Name	Name	Last commit message	Last commit date
Latest commit cc2qe checkpoint Apr 13, 2017 ccd079d · Apr 13, 2017 History 20 Commits
.gitignore	.gitignore	initial commit	Feb 9, 2015
LICENSE	LICENSE	Initial commit	Feb 9, 2015
README.md	README.md	Initial commit	Feb 9, 2015
bamcleanheader.py	bamcleanheader.py	bamcleanheader can now handle multiple files, which is not recommende…	Apr 2, 2015
bamfilterrg.py	bamfilterrg.py	bail if no BAM file instead of hanging forever	Feb 10, 2015
bamfixflags.py	bamfixflags.py	checkpoint	Apr 13, 2017
bamgroupreads.py	bamgroupreads.py	when pysam gets the sigpipe, it exits with a ValueError.	Jul 26, 2016
bamheadrg.py	bamheadrg.py	no sq	Apr 2, 2015
bamlibs.py	bamlibs.py	don't check for SQ in header	Apr 2, 2015
bamtofastq.py	bamtofastq.py	allow BAMs without readgroups	May 30, 2016
sectosupp	sectosupp	script to convert secondary read flags to supplementary	Aug 17, 2015

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