Enhance cohort analysis features and introduce long task queue for advntr jobs #85
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… job addition to cohort post-completion
…utput files - Updated `aggregate_cohort` to handle multiple adVNTR filenames, including `output_adVNTR_result.tsv` - Enhanced `find_results_files` and `load_results_from_dirs` to support multiple filenames for adVNTR - Ensured correct `sample_id` extraction for both Kestrel and adVNTR results Closes #83
bump API version to 0.15.0 Closes #82
- Added configuration to define two queues: `vntyper_queue` for normal jobs and `vntyper_long_queue` for advntr long tasks. - In `main.py`, we enqueue advntr tasks to the `vntyper_long_queue` using `apply_async(queue="vntyper_long_queue")`. - The user can start a separate Celery worker for `vntyper_long_queue` only after the normal queue is done. - This ensures advntr tasks run last, meeting the requirements. Bump API version to 0.16.0 Closes #84
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Implement support for multiple input directories and zipped files in the cohort command. Add a new endpoint for joint cohort analysis and configure a long task queue for advntr jobs to optimize processing. Bump API versions accordingly.
Closes #83
Closes #82
Closes #84
Closes #75