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Update AllFunder_Variant_calling.md
added dates for next workshop and updated pre-req section
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*Note: In 2024, some workshops will be taught in person and others will be online via Zoom.* | ||
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<!-- This content will not appear in the rendered Markdown --> | ||
<!-- Last workshop May 28, 31, June 4, 7, 2024 | ||
<!-- Last workshop May 28, 31, June 4, 7, 2024 --> | ||
### **IN-PERSON Workshop dates and times:** | ||
### **Location: Longwood Medical Area** | ||
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**Anticipated next offering of the Variant Calling workshop is April 2025** | ||
**Tuesday, September 17, 2024**: 9:30 AM - 12 PM | ||
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**TBD**: 9:30 AM - 12 PM | ||
**Friday, Septmeber 20, 2024**: 9:30 AM - 12 PM | ||
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**TBD**: 9:30 AM - 12 PM | ||
**Tuesday, September 24, 2024**: 9:30 AM - 12 PM | ||
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**TBD**: 9:30 AM - 12 PM | ||
_Instruction will be mostly learner-centric, requiring a time commitment between the workshop sessions!_ | ||
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**TBD**: 9:30 AM - 12 PM | ||
Note: Workshop dates and times are subject to change | ||
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_Instruction will be mostly learner-centric, requiring a time commitment between the workshop sessions!_ | ||
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<!-- This content will not appear in the rendered Markdown --> | ||
<!-- Note: Workshop dates and times are subject to change --> | ||
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@@ -33,16 +30,29 @@ This Introduction to Variant Analysis workshop is aimed at providing hands-on be | |
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### **Prerequisites:** | ||
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This is one of our advanced [workshops](https://hbctraining.github.io/main/), and **requires registants to have attended the following Basic workshop** offered by our training team in the **last 6-8 months**: | ||
This is one of our advanced [workshops](https://hbctraining.github.io/main/), and assumes that users have a working knowledg of Shell and HPC or have attended the following Basic workshop offered by our training team in the last 6-8 months: | ||
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- [Introduction to command-line interface workshop ](https://hbctraining.github.io/main/registrations/AllFunders_Intro_to_Shell) | ||
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**I am fluent in command-line and already use HMS-RC's O2 cluster but have not attended the HBC prerequisite workshop, can I still register?** | ||
There is an expectation of participants to have some/all of the following Shell/HPC knowledge: | ||
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- Experience using a High-Performance Computing (HPC) cluster environment (e.g. O2 at HMS) | ||
- Navigating filesystems (changing directories, listing contents, full/relative paths, wildcards) | ||
- Creating, moving, copying, and removing files/directories | ||
- Searching files and redirection | ||
- Creating ‘for loops' and small scripts | ||
- Creating long, advanced script | ||
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I am experienced using Shell/HPC but have not attended the HBC prerequisite workshop, can I still register? | ||
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Yes, please register and provide your Shell/HPC exerience on the form, and we'll get back to you. | ||
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<!-- OLD: | ||
Yes, you can register **AND** please do the following: | ||
- Complete the registration first | ||
- Then email us directly at [email protected] with a **detailed** description of your knowledge/experience in command-line interface and HPC. **Failure to do this step may prevent you from being accepted into this advanced workshop.** | ||
- Then email us directly at [email protected] with a **detailed** description of your knowledge/experience in command-line interface and HPC. **Failure to do this step may prevent you from being accepted into this advanced workshop.** --> | ||
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