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Update AllFunder_Variant_calling.md
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added dates for next workshop and updated pre-req section
mariasimoneau authored Jul 25, 2024

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*Note: In 2024, some workshops will be taught in person and others will be online via Zoom.*

<!-- This content will not appear in the rendered Markdown -->
<!-- Last workshop May 28, 31, June 4, 7, 2024
<!-- Last workshop May 28, 31, June 4, 7, 2024 -->
### **IN-PERSON Workshop dates and times:**
### **Location: Longwood Medical Area**
-->

**Anticipated next offering of the Variant Calling workshop is April 2025**
**Tuesday, September 17, 2024**: 9:30 AM - 12 PM

**TBD**: 9:30 AM - 12 PM
**Friday, Septmeber 20, 2024**: 9:30 AM - 12 PM

**TBD**: 9:30 AM - 12 PM
**Tuesday, September 24, 2024**: 9:30 AM - 12 PM

**TBD**: 9:30 AM - 12 PM
_Instruction will be mostly learner-centric, requiring a time commitment between the workshop sessions!_

**TBD**: 9:30 AM - 12 PM
Note: Workshop dates and times are subject to change

_Instruction will be mostly learner-centric, requiring a time commitment between the workshop sessions!_

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<!-- Note: Workshop dates and times are subject to change -->

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@@ -33,16 +30,29 @@ This Introduction to Variant Analysis workshop is aimed at providing hands-on be

### **Prerequisites:**

This is one of our advanced [workshops](https://hbctraining.github.io/main/), and **requires registants to have attended the following Basic workshop** offered by our training team in the **last 6-8 months**:
This is one of our advanced [workshops](https://hbctraining.github.io/main/), and assumes that users have a working knowledg of Shell and HPC or have attended the following Basic workshop offered by our training team in the last 6-8 months:

- [Introduction to command-line interface workshop ](https://hbctraining.github.io/main/registrations/AllFunders_Intro_to_Shell)

**I am fluent in command-line and already use HMS-RC's O2 cluster but have not attended the HBC prerequisite workshop, can I still register?**
There is an expectation of participants to have some/all of the following Shell/HPC knowledge:

- Experience using a High-Performance Computing (HPC) cluster environment (e.g. O2 at HMS)
- Navigating filesystems (changing directories, listing contents, full/relative paths, wildcards)
- Creating, moving, copying, and removing files/directories
- Searching files and redirection
- Creating ‘for loops' and small scripts
- Creating long, advanced script

I am experienced using Shell/HPC but have not attended the HBC prerequisite workshop, can I still register?

Yes, please register and provide your Shell/HPC exerience on the form, and we'll get back to you.


<!-- OLD:
Yes, you can register **AND** please do the following:
- Complete the registration first
- Then email us directly at [email protected] with a **detailed** description of your knowledge/experience in command-line interface and HPC. **Failure to do this step may prevent you from being accepted into this advanced workshop.**
- Then email us directly at [email protected] with a **detailed** description of your knowledge/experience in command-line interface and HPC. **Failure to do this step may prevent you from being accepted into this advanced workshop.** -->

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