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WIP: nwb_generate_format_docs: Support generating complete documentation #5

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Apr 9, 2018
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WIP: nwb_generate_format_docs: Support generating complete documentation #5

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18 changes: 13 additions & 5 deletions nwb_docutils/generate_format_docs.py
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,8 @@
# Python 2/3 compatibility
from __future__ import print_function

import pynwb

from pynwb.form.spec.spec import GroupSpec, DatasetSpec, LinkSpec, AttributeSpec, RefSpec
from pynwb.spec import NWBGroupSpec, NWBDatasetSpec, NWBNamespace
from pynwb.form.spec.namespace import NamespaceCatalog
Expand Down Expand Up @@ -81,11 +83,17 @@ def load_nwb_namespace(namespace_file, default_namespace='core', resolve=spec_re
Load an nwb namespace from file
:return:
"""
namespace = NamespaceCatalog(default_namespace,
group_spec_cls=NWBGroupSpec,
dataset_spec_cls=NWBDatasetSpec,
spec_namespace_cls=NWBNamespace)
namespace.load_namespaces(namespace_file, resolve=resolve)
# namespace = NamespaceCatalog(default_namespace,
# group_spec_cls=NWBGroupSpec,
# dataset_spec_cls=NWBDatasetSpec,
# spec_namespace_cls=NWBNamespace)
# namespace.load_namespaces(namespace_file, resolve=resolve)

# XXX
type_map = pynwb.get_type_map()
type_map.load_namespaces(namespace_file)
namespace = type_map.namespace_catalog

default_spec_catalog = namespace.get_namespace(default_namespace).catalog # TODO check if this should be 'core' or default_namespace?
return namespace, default_spec_catalog

Expand Down