Use models from Hugging Face

The docker container now includes the model from https://huggingface.co/imageomics/BGNN-trait-segmentation.

Dataverse Download version

In this release, the model weights for the 2 models we are using are store at osu on the datacommun.
The model weights are downloaded using pydataverse python module.

version with 3 main function options

Update of the main function:
3 fucntions, 3 modes:
no rescale
rescale to ratio
rescale to origin

change permission of segmentation_main.py

we change the permission of segmentation_main.py so the segmentation_main.py can be directly from the container using the following usage : singularity exec image_name.sif segmentation_main.py

Change resize Interpolation

Fix the resize interpolation so that the segments of the different traits have hard edges. It removes intermediate values at the interface between 2 traits.

1rs release for trait segmentation

This release contained the current working version of trait segmentation, Dockerfile to build the container via github action.
For more detail refer to README.md