Forgot to include one file

src/simsopt/geo/orientedcurve.py

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+import jax.numpy as jnp
+from math import pi, sin, cos
+import numpy as np
+from .curve import JaxCurve
+from simsopt._core.optimizable import Optimizable
+
+__all__ = ['OrientedCurveXYZFourier']
+
+def shift_pure( v, xyz ):
+    for ii in range(0,3):
+        v = v.at[:,ii].add(xyz[ii])
+    return v
+
+def rotate_pure( v, ypr ):        
+    yaw = ypr[0]
+    pitch = ypr[1]
+    roll = ypr[2]
+
+    Myaw = jnp.asarray(
+        [[jnp.cos(yaw), -jnp.sin(yaw), 0],
+        [jnp.sin(yaw), jnp.cos(yaw), 0],
+        [0, 0, 1]]
+    )
+    Mpitch = jnp.asarray(
+        [[jnp.cos(pitch), 0, jnp.sin(pitch)],
+        [0, 1, 0],
+        [-jnp.sin(pitch), 0, jnp.cos(pitch)]]
+    )
+    Mroll = jnp.asarray(
+        [[1, 0, 0],
+        [0, jnp.cos(roll), -jnp.sin(roll)],
+        [0, jnp.sin(roll), jnp.cos(roll)]]
+    )
+
+    return v @ Myaw @ Mpitch @ Mroll
+
+def centercurve_pure(dofs, quadpoints, order):
+    xyz = dofs[0:3]
+    ypr = dofs[3:6]
+    fmn = dofs[6:]
+
+    k = len(fmn)//3
+    coeffs = [fmn[:k], fmn[k:(2*k)], fmn[(2*k):]]
+    points = quadpoints
+    gamma = jnp.zeros((len(points), 3))
+    for i in range(0,3):
+        for j in range(0, order):
+            gamma = gamma.at[:, i].add(coeffs[i][2 * j    ] * jnp.sin(2 * pi * (j+1) * points))
+            gamma = gamma.at[:, i].add(coeffs[i][2 * j + 1] * jnp.cos(2 * pi * (j+1) * points))
+
+    return shift_pure( rotate_pure( gamma, ypr ), xyz )
+
+
+class OrientedCurveXYZFourier( JaxCurve ):
+    """
+    OrientedCurveXYZFourier is a translated and rotated 
+    JaxCurveXYZFourier Curve.
+    """
+    def __init__(self, quadpoints, order, dofs=None ):
+        if isinstance(quadpoints, int):
+            quadpoints = np.linspace(0, 1, quadpoints, endpoint=False)
+
+        self.order = order
+        pure = lambda dofs, points: centercurve_pure(dofs, points, self.order)
+
+        self.coefficients = [np.zeros((3,)), np.zeros((3,)), np.zeros((2*order,)), np.zeros((2*order,)), np.zeros((2*order,))]
+        if dofs is None:
+            super().__init__(quadpoints, pure, x0=np.concatenate(self.coefficients),
+                             external_dof_setter=WindowpaneCurveXYZFourier.set_dofs_impl,
+                             names=self._make_names())
+        else:
+            super().__init__(quadpoints, pure, dofs=dofs,
+                             external_dof_setter=WindowpaneCurveXYZFourier.set_dofs_impl,
+                             names=self._make_names())
+
+    def num_dofs(self):
+        """
+        This function returns the number of dofs associated to this object.
+        """
+        return 3 + 3 + 3*(2*self.order)
+
+    def get_dofs(self):
+        """
+        This function returns the dofs associated to this object.
+        """
+        return np.concatenate(self.coefficients)
+
+    def set_dofs_impl(self, dofs):
+        self.coefficients[0][:] = dofs[0:3]
+        self.coefficients[1][:] = dofs[3:6]
+
+        counter = 6
+        for i in range(0,3):
+            for j in range(0, self.order):
+                self.coefficients[i+2][2*j] = dofs[counter]
+                counter += 1
+                self.coefficients[i+2][2*j+1] = dofs[counter]
+                counter += 1
+
+
+
+    def _make_names(self):
+        xyc_name = ['x0', 'y0', 'z0']
+        ypr_name = ['yaw', 'pitch', 'roll']
+        dofs_name = []
+        for c in ['x', 'y', 'z']:
+            for j in range(0, self.order):
+                dofs_name += [f'{c}s({j+1})', f'{c}c({j+1})']
+        return xyc_name + ypr_name + dofs_name
+