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Taavi Päll
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Feb 15, 2021
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,21 @@ | ||
| name: pangolin | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| dependencies: | ||
| - biopython=1.74 | ||
| - iqtree<2 | ||
| - mafft | ||
| - minimap2 | ||
| - pip=19.3.1 | ||
| - python=3.6 | ||
| - snakemake-minimal=5.13 | ||
| - pip: | ||
| - pandas==1.0.1 | ||
| - pytools==2020.1 | ||
| - dendropy>=4.4.0 | ||
| - git+https://github.com/cov-ert/datafunk.git | ||
| - git+https://github.com/cov-lineages/pangoLEARN.git | ||
| - git+https://github.com/cov-lineages/lineages.git@2020-05-19-2 | ||
| - git+https://github.com/cov-lineages/pangolin.git |