-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
* ALS-5427: Updating Introspection token (#117) * token needs to be updated if persistent. * need to update the DML persisting via snapshot script to include upserting updated tokens. * should upsert in pic-sure-schema.sql as well to get ready to remove DML from DDL. * both the resources-registration.sql and pic-sure-schema.sql will be eliminated by using proper migration scripts. --------- * Add XSS protection in httpd-vhosts config (#119) The httpd-vhosts.conf configuration file now includes an option for built-in XSS protection supported by modern web browsers. It is set to block the entire page if a Cross-Site Scripting (XSS) attack is detected. This header already exists in our frontend harness and previously existed in the UI vhost files. * Update gss_prefix in infrastructure instances (#120) This commit modifies the gss_prefix in multiple Terraform instances to include a new variable, environment_prefix. It also adds this new variable in the variables.tf file for infrastructure app. This change provides more flexibility and control over the configuration of infrastructure instances. * [ALS-5567] Modify infrastructure to make a configurable value (#121) * [ALS-5567] Parameterize help link in app configuration * [ALS-5567] Add login link variable to app configuration * [ALS-5514] Add Okta configuration to infrastructure The Okta client API and domain configurations have been added. These are used for session management, improving secure access control to the application. The respective fields have been included in wildfly-instance.tf, standalone.xml, and variables.tf files. * [ALS-5514] Correct Okta variable in wildfly-instance.tf An incorrect Okta variable name was identified and replaced as necessary. The okta_domain has been properly replaced with okta_client_origin for proper Okta configuration management. * [ALS-5558] Add privacyPolicyLink (#122) * [ALS-5514] Adjust indentations in standalone.xml * [ALS-5514] Migrating changes from GitLab Co-authored-by: TDeSain <[email protected]> Co-authored-by: Tom <[email protected]> Co-authored-by: James <[email protected]>
- Loading branch information
1 parent
8f49e9e
commit 8d473cf
Showing
10 changed files
with
333 additions
and
207 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,20 +1,5 @@ | ||
{ | ||
"bannerConfiguration": [ | ||
{ | ||
"text": "Because of a lapse in government funding, the information on this website may not be up to date, transactions submitted via the website may not be processed, and the agency may not be able to respond to inquiries until appropriations are enacted. <br />The NIH Clinical Center (the research hospital of NIH) is open. For more details about its operating status, please visit <a href='https://urldefense.proofpoint.com/v2/url?u=http-3A__cc.nih.gov_&d=DwMF-g&c=WO-RGvefibhHBZq3fL85hQ&r=JrvHRNUaLM4JEXPBO7asJ6K88twMitD1WUK5OovbsHHtoJgrwK3owhHE-Qe_RQjE&m=i1X4Vqc_51lPo_Vgc-Tr6mtbqokt7q4j6wEtg9e4sWaoYz7riX2NwLQBhJKhpbr5&s=VlQRwDFt1QfEHKjjrud8hpr3fUx5SGtHk3ImbwgjGak&e=' target='_blank'>cc.nih.gov</a>. <br />Updates regarding government operating status and resumption of normal operations can be found at <a href='https://urldefense.proofpoint.com/v2/url?u=https-3A__www.opm.gov_&d=DwMF-g&c=WO-RGvefibhHBZq3fL85hQ&r=JrvHRNUaLM4JEXPBO7asJ6K88twMitD1WUK5OovbsHHtoJgrwK3owhHE-Qe_RQjE&m=i1X4Vqc_51lPo_Vgc-Tr6mtbqokt7q4j6wEtg9e4sWaoYz7riX2NwLQBhJKhpbr5&s=tpDX_bYTpgVCobViig4inj3nuyix1vi_6Qs5XGcUzCM&e=' target='_blank'>OPM.gov</a>.", | ||
"startDate": "2023-09-29T00:00:00Z", | ||
"endDate": "2024-09-29T00:00:00Z", | ||
"styles": "background-color: #C0143C; color: #fff; font-size: 1.1em; padding: 10px;", | ||
"isDismissible": false, | ||
"disabled": true | ||
}, | ||
{ | ||
"text": "Open PIC-SURE without login is now live! Users can search, query, and build cohorts using data in BDC, with no login required. Check out this new feature <a href='https://openpicsure.biodatacatalyst.nhlbi.nih.gov/picsureui/' target='_blank' style='color: #fff; text-decoration: underline;'>here</a>.<br />The “Open Access” tab will no longer be accessible from this site starting December 2023. Please use the <a href='http://openpicsure.biodatacatalyst.nhlbi.nih.gov/' target='_blank' style='color: #fff; text-decoration: underline;'>Open PIC-SURE site</a> to continue using the Open Access functionality.", | ||
"startDate": "2023-11-01T00:00:00Z", | ||
"endDate": "2024-12-23T00:00:00Z", | ||
"styles": "background-color: #1a568c; color: #fff; font-size: 1.1em; padding: 10px;", | ||
"isDismissible": true, | ||
"disabled": false | ||
} | ||
|
||
] | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,106 +1,107 @@ | ||
{ | ||
"resources": [ | ||
{ | ||
"id" : "datastage", | ||
"name" : "datastage", | ||
"basePath" : "/picsure", | ||
"findPath" : "/PIC-SURE/search" | ||
} | ||
], | ||
"queryExportType":"EXPORT_ASYNC", | ||
"picSureResourceId":"02e23f52-f354-4e8b-992c-d37c8b9ba140", | ||
"openAccessResourceId":"70c837be-5ffc-11eb-ae93-0242ac130002", | ||
"visualizationResourceId":"ca0ad4a9-130a-3a8a-ae00-e35b07f1108b", | ||
"applicationIdForBaseQuery": "${application_id_for_base_query}", | ||
"helpLink": "${help_link}", | ||
"loginLink": "${login_link}", | ||
"pdfLink": "https://tinyurl.com/BDC-PIC-SURE-User-Guide\" aria-label='User Guide, this link will open a new browser tab' target='_blank'", | ||
"videoLink": "https://www.youtube.com/playlist?list=PLJ6YccH8TEufZ5L-ctxzFF7vuZRLVacKw\" aria-label='Video Demonstration, this link will open a new browser tab' target='_blank'", | ||
"jupyterExampleLink": "https://github.com/hms-dbmi/Access-to-Data-using-PIC-SURE-API/tree/master/NHLBI_BioData_Catalyst\" aria-label='Jupyter Example Notebooks, this link will open a new browser tab' target='_blank'", | ||
"documentationLink": "https://bdcatalyst.gitbook.io/biodata-catalyst-documentation/written-documentation/getting-started/explore-available-data/pic-sure-for-biodata-catalyst-user-guide\" aria-label='BioData Catalyst Documentation, this link will open a new browser tab' target='_blank'", | ||
"privacyPolicyLink": "https://biodatacatalyst.nhlbi.nih.gov/privacy/", | ||
"advancedSearchLink": "/transmart/login/callback_processor", | ||
"logoPath":"/static/images/logo.png", | ||
"harmonizedPath": "\\DCC Harmonized data set", | ||
"harmonizedConsentPath": "\\_harmonized_consent\\", | ||
"topmedConsentPath": "\\_topmed_consents\\", | ||
"consentsPath": "\\_consents", | ||
"categoryAliases": { | ||
"dcc harmonized data set" : "DCC Harmonized data set", | ||
"phs000956" : "AMISH", | ||
"phs000280" : "ARIC", | ||
"phs001211" : "ARIC", | ||
"phs001143" : "BAGS", | ||
"phs000820" : "CCAF", | ||
"phs001189" : "CCAF", | ||
"phs000284" : "CFS", | ||
"phs000954" : "CFS", | ||
"phs000287" : "CHS", | ||
"phs001368" : "CHS", | ||
"phs000179" : "COPDGENE", | ||
"phs000951" : "COPDGENE", | ||
"phs000988" : "CRA", | ||
"phs001412" : "DHS", | ||
"phs000946" : "EOCOPD", | ||
"phs000007" : "FHS", | ||
"phs000974" : "FHS", | ||
"phs001180" : "GALAII", | ||
"phs000920" : "GALAII", | ||
"phs001074" : "GENESTAR", | ||
"phs001218" : "GENESTAR", | ||
"phs001238" : "GENOA", | ||
"phs001345" : "GENOA", | ||
"phs000784" : "GENSALT", | ||
"phs001217" : "GENSALT", | ||
"phs001359" : "GOLDN", | ||
"phs001013" : "HVH", | ||
"phs000993" : "HVH", | ||
"phs001293" : "HYPERGEN", | ||
"phs000286" : "JHS", | ||
"phs000964" : "JHS", | ||
"phs001402" : "MAYOVTE", | ||
"phs000209" : "MESA", | ||
"phs001416" : "MESA", | ||
"phs001001" : "MGHAF", | ||
"phs001062" : "MGHAF", | ||
"phs002299" : "ORCHID", | ||
"phs001024" : "PARTNERS", | ||
"phs001215" : "SAFHS", | ||
"phs000921" : "SAGE", | ||
"phs001207" : "SARCOIDOSIS", | ||
"phs000422" : "SARP", | ||
"phs000972" : "SAS", | ||
{ | ||
"id": "datastage", | ||
"name": "datastage", | ||
"basePath": "/picsure", | ||
"findPath": "/PIC-SURE/search" | ||
} | ||
], | ||
"queryExportType": "EXPORT_ASYNC", | ||
"picSureResourceId": "02e23f52-f354-4e8b-992c-d37c8b9ba140", | ||
"openAccessResourceId": "70c837be-5ffc-11eb-ae93-0242ac130002", | ||
"visualizationResourceId": "ca0ad4a9-130a-3a8a-ae00-e35b07f1108b", | ||
"applicationIdForBaseQuery": "${application_id_for_base_query}", | ||
"helpLink": "${help_link}", | ||
"loginLink": "${login_link}", | ||
"pdfLink": "${pdf_link}", | ||
"videoLink": "https://www.youtube.com/playlist?list=PLJ6YccH8TEufZ5L-ctxzFF7vuZRLVacKw\" aria-label='Video Demonstration, this link will open a new browser tab' target='_blank'", | ||
"jupyterExampleLink": "https://github.com/hms-dbmi/Access-to-Data-using-PIC-SURE-API/tree/master/NHLBI_BioData_Catalyst\" aria-label='Jupyter Example Notebooks, this link will open a new browser tab' target='_blank'", | ||
"documentationLink": "https://bdcatalyst.gitbook.io/biodata-catalyst-documentation/written-documentation/getting-started/explore-available-data/pic-sure-for-biodata-catalyst-user-guide\" aria-label='BioData Catalyst Documentation, this link will open a new browser tab' target='_blank'", | ||
"privacyPolicyLink": "https://biodatacatalyst.nhlbi.nih.gov/privacy/", | ||
"advancedSearchLink": "/transmart/login/callback_processor", | ||
"logoPath": "/static/images/logo.png", | ||
"harmonizedPath": "\\DCC Harmonized data set", | ||
"harmonizedConsentPath": "\\_harmonized_consent\\", | ||
"topmedConsentPath": "\\_topmed_consents\\", | ||
"consentsPath": "\\_consents", | ||
"categoryAliases": { | ||
"dcc harmonized data set": "DCC Harmonized data set", | ||
"phs000956": "AMISH", | ||
"phs000280": "ARIC", | ||
"phs001211": "ARIC", | ||
"phs001143": "BAGS", | ||
"phs000820": "CCAF", | ||
"phs001189": "CCAF", | ||
"phs000284": "CFS", | ||
"phs000954": "CFS", | ||
"phs000287": "CHS", | ||
"phs001368": "CHS", | ||
"phs000179": "COPDGENE", | ||
"phs000951": "COPDGENE", | ||
"phs000988": "CRA", | ||
"phs001412": "DHS", | ||
"phs000946": "EOCOPD", | ||
"phs000007": "FHS", | ||
"phs000974": "FHS", | ||
"phs001180": "GALAII", | ||
"phs000920": "GALAII", | ||
"phs001074": "GENESTAR", | ||
"phs001218": "GENESTAR", | ||
"phs001238": "GENOA", | ||
"phs001345": "GENOA", | ||
"phs000784": "GENSALT", | ||
"phs001217": "GENSALT", | ||
"phs001359": "GOLDN", | ||
"phs001013": "HVH", | ||
"phs000993": "HVH", | ||
"phs001293": "HYPERGEN", | ||
"phs000286": "JHS", | ||
"phs000964": "JHS", | ||
"phs001402": "MAYOVTE", | ||
"phs000209": "MESA", | ||
"phs001416": "MESA", | ||
"phs001001": "MGHAF", | ||
"phs001062": "MGHAF", | ||
"phs002299": "ORCHID", | ||
"phs001024": "PARTNERS", | ||
"phs001215": "SAFHS", | ||
"phs000921": "SAGE", | ||
"phs001207": "SARCOIDOSIS", | ||
"phs000422": "SARP", | ||
"phs000972": "SAS", | ||
"phs000914": "SAS", | ||
"phs001387" : "THRV", | ||
"phs000997" : "VAFAR", | ||
"phs001032" : "VUAF", | ||
"phs001040" : "WGHS", | ||
"phs000200" : "WHI", | ||
"phs001237" : "WHI", | ||
"phs001387": "THRV", | ||
"phs000997": "VAFAR", | ||
"phs001032": "VUAF", | ||
"phs001040": "WGHS", | ||
"phs000200": "WHI", | ||
"phs001237": "WHI", | ||
"phs002385": "HCT_for_SCD", | ||
"phs000810": "HCHS_SOL", | ||
"phs001252": "ECLIPSE", | ||
"phs001194": "PCGC", | ||
"phs000703": "CATHGEN", | ||
"phs000285": "CARDIA", | ||
"phs002363": "RED_CORAL", | ||
"phs002362": "CSSCD", | ||
"phs002386": "STOP-II", | ||
"phs002383": "Walk-PHaSST", | ||
"phs002348": "MSH" | ||
"phs000810": "HCHS_SOL", | ||
"phs001252": "ECLIPSE", | ||
"phs001194": "PCGC", | ||
"phs000703": "CATHGEN", | ||
"phs000285": "CARDIA", | ||
"phs002363": "RED_CORAL", | ||
"phs002362": "CSSCD", | ||
"phs002386": "STOP-II", | ||
"phs002383": "Walk-PHaSST", | ||
"phs002348": "MSH" | ||
}, | ||
"categorySearchResultList" : [ | ||
"DCC_Harmonized_data_set", | ||
"Coronary_Artery_Risk_Development_in_Young_Adults_CARDIA", | ||
"Framingham_Cohort", | ||
"Genetic_Epidemiology_of_COPD_COPDGene_", | ||
"Multi_Ethnic_Study_of_Atherosclerosis_MESA_Cohort", | ||
"The_Jackson_Heart_Study_JHS_", | ||
"_Consents" | ||
], | ||
"idp_provider":"${idp_provider}", | ||
"idp_provider_uri":"${idp_provider_uri}", | ||
"fence_client_id":"${fence_client_id}", | ||
"analyticsId":"${analytics_id}", | ||
"tagManagerId": "${tag_manager_id}" | ||
} | ||
"categorySearchResultList": [ | ||
"DCC_Harmonized_data_set", | ||
"Coronary_Artery_Risk_Development_in_Young_Adults_CARDIA", | ||
"Framingham_Cohort", | ||
"Genetic_Epidemiology_of_COPD_COPDGene_", | ||
"Multi_Ethnic_Study_of_Atherosclerosis_MESA_Cohort", | ||
"The_Jackson_Heart_Study_JHS_", | ||
"_Consents" | ||
], | ||
"idp_provider": "${idp_provider}", | ||
"idp_provider_uri": "${idp_provider_uri}", | ||
"fence_client_id": "${fence_client_id}", | ||
"analyticsId": "${analytics_id}", | ||
"tagManagerId": "${tag_manager_id}", | ||
"client_id": "${client_id}" | ||
} |
Oops, something went wrong.