Implement support for retaining Pandas index #2361
Workflow file for this run
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| name: tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - "*" | |
| workflow_dispatch: | |
| inputs: | |
| target: | |
| description: "How much of the test suite to run" | |
| type: choice | |
| default: default | |
| options: | |
| - default | |
| - full | |
| - downstream | |
| cache: | |
| description: "Use cache" | |
| type: boolean | |
| default: true | |
| schedule: | |
| - cron: "0 14 * * SUN" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| SETUPTOOLS_ENABLE_FEATURES: "legacy-editable" | |
| DISPLAY: ":99.0" | |
| PYTHONIOENCODING: "utf-8" | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| OMP_NUM_THREADS: 1 | |
| OPENBLAS_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| VECLIB_MAXIMUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| NUMBA_NUM_THREADS: 1 | |
| PYDEVD_DISABLE_FILE_VALIDATION: 1 | |
| jobs: | |
| pre_commit: | |
| name: Run pre-commit | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - uses: holoviz-dev/holoviz_tasks/pre-commit@v0 | |
| setup: | |
| name: Setup workflow | |
| runs-on: ubuntu-latest | |
| permissions: | |
| pull-requests: read | |
| outputs: | |
| code_change: ${{ steps.filter.outputs.code }} | |
| matrix: ${{ env.MATRIX }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| if: github.event_name != 'pull_request' | |
| - name: Check for code changes | |
| uses: dorny/paths-filter@v3 | |
| id: filter | |
| with: | |
| filters: | | |
| code: | |
| - 'holoviews/**' | |
| - 'examples/**' | |
| - 'setup.py' | |
| - 'pyproject.toml' | |
| - '.github/workflows/test.yaml' | |
| - name: Set matrix option | |
| run: | | |
| if [[ '${{ github.event_name }}' == 'workflow_dispatch' ]]; then | |
| OPTION=${{ github.event.inputs.target }} | |
| elif [[ '${{ github.event_name }}' == 'schedule' ]]; then | |
| OPTION="full" | |
| elif [[ '${{ github.event_name }}' == 'push' && '${{ github.ref_type }}' == 'tag' ]]; then | |
| OPTION="full" | |
| else | |
| OPTION="default" | |
| fi | |
| echo "MATRIX_OPTION=$OPTION" >> $GITHUB_ENV | |
| - name: Set test matrix with 'default' option | |
| if: env.MATRIX_OPTION == 'default' | |
| run: | | |
| MATRIX=$(jq -nsc '{ | |
| "os": ["ubuntu-latest", "macos-latest", "windows-latest"], | |
| "python-version": ["3.9", "3.12"] | |
| }') | |
| echo "MATRIX=$MATRIX" >> $GITHUB_ENV | |
| - name: Set test matrix with 'full' option | |
| if: env.MATRIX_OPTION == 'full' | |
| run: | | |
| MATRIX=$(jq -nsc '{ | |
| "os": ["ubuntu-latest", "macos-latest", "windows-latest"], | |
| "python-version": ["3.9", "3.10", "3.11", "3.12"] | |
| }') | |
| echo "MATRIX=$MATRIX" >> $GITHUB_ENV | |
| - name: Set test matrix with 'downstream' option | |
| if: env.MATRIX_OPTION == 'downstream' | |
| run: | | |
| MATRIX=$(jq -nsc '{ | |
| "os": ["ubuntu-latest"], | |
| "python-version": ["3.11"] | |
| }') | |
| echo "MATRIX=$MATRIX" >> $GITHUB_ENV | |
| unit_test_suite: | |
| name: Unit tests on Python ${{ matrix.python-version }}, ${{ matrix.os }} | |
| needs: [pre_commit, setup] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJson(needs.setup.outputs.matrix) }} | |
| timeout-minutes: 120 | |
| env: | |
| DESC: "Python ${{ matrix.python-version }}, ${{ matrix.os }} unit tests" | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| steps: | |
| - uses: holoviz-dev/holoviz_tasks/install@v0 | |
| if: needs.setup.outputs.code_change == 'true' | |
| with: | |
| name: unit_test_suite | |
| python-version: ${{ matrix.python-version }} | |
| channel-priority: flexible | |
| channels: pyviz/label/dev,conda-forge,nodefaults | |
| envs: "-o flakes -o tests -o examples_tests -o tests_ci" | |
| cache: ${{ github.event.inputs.cache || github.event.inputs.cache == '' }} | |
| conda-update: true | |
| id: install | |
| - name: Check packages latest version | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: | | |
| conda activate test-environment | |
| python scripts/check_latest_packages.py bokeh panel param datashader | |
| - name: Download data | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: | | |
| conda activate test-environment | |
| bash scripts/download_data.sh | |
| - name: doit test_unit | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: | | |
| conda activate test-environment | |
| doit test_unit | |
| - name: test examples | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: | | |
| conda activate test-environment | |
| doit test_examples | |
| - name: codecov | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: | | |
| conda activate test-environment | |
| codecov | |
| ui_test_suite: | |
| name: UI tests on Python ${{ matrix.python-version }}, ${{ matrix.os }} | |
| needs: [pre_commit, setup] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.9"] | |
| timeout-minutes: 60 | |
| env: | |
| DESC: "Python ${{ matrix.python-version }}, ${{ matrix.os }} UI tests" | |
| PANEL_LOG_LEVEL: info | |
| # Without this env var `doit env_create ...` uses by default | |
| # the `pyviz` channel, except that we don't want to configure | |
| # it as one of the sources. | |
| PYCTDEV_SELF_CHANNEL: "pyviz/label/dev" | |
| steps: | |
| - uses: holoviz-dev/holoviz_tasks/install@v0 | |
| if: needs.setup.outputs.code_change == 'true' | |
| with: | |
| name: ui_test_suite | |
| python-version: ${{ matrix.python-version }} | |
| channels: pyviz/label/dev,conda-forge,nodefaults | |
| envs: "-o recommended -o tests -o build -o tests_ci" | |
| cache: ${{ github.event.inputs.cache || github.event.inputs.cache == '' }} | |
| playwright: true | |
| id: install | |
| - name: doit test_ui | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: | | |
| conda activate test-environment | |
| doit test_ui | |
| - name: Upload coverage to Codecov | |
| if: needs.setup.outputs.code_change == 'true' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./coverage.xml | |
| flags: ui-tests | |
| fail_ci_if_error: false # optional (default = false) | |
| core_test_suite: | |
| name: Core tests on Python ${{ matrix.python-version }}, ${{ matrix.os }} | |
| needs: [pre_commit, setup] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.12"] | |
| timeout-minutes: 120 | |
| env: | |
| DESC: "Python ${{ matrix.python-version }}, ${{ matrix.os }} core tests" | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| steps: | |
| - uses: holoviz-dev/holoviz_tasks/install@v0 | |
| if: needs.setup.outputs.code_change == 'true' | |
| with: | |
| name: core_test_suite | |
| python-version: ${{ matrix.python-version }} | |
| # channel-priority: strict | |
| channels: pyviz/label/dev,conda-forge,nodefaults | |
| envs: "-o tests_core -o tests_ci" | |
| cache: ${{ github.event.inputs.cache || github.event.inputs.cache == '' }} | |
| id: install | |
| - uses: actions/checkout@v3 | |
| if: needs.setup.outputs.code_change == 'true' | |
| with: | |
| fetch-depth: "100" | |
| - name: Fetch unshallow | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: git fetch --prune --tags --unshallow -f | |
| - name: install | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: | | |
| python -m pip install -ve '.[tests_core, tests_ci]' | |
| - name: Download data | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: | | |
| conda activate test-environment | |
| bash scripts/download_data.sh | |
| - name: Check packages latest version | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: | | |
| conda activate test-environment | |
| python scripts/check_latest_packages.py numpy pandas bokeh panel param | |
| - name: doit test_unit | |
| if: needs.setup.outputs.code_change == 'true' | |
| run: | | |
| conda activate test-environment | |
| pytest holoviews |