Automated report

hubmapconsortium · Nov 8, 2023 · 1b537bf · 1b537bf
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diff --git a/NOTES.md b/NOTES.md
@@ -6,9 +6,9 @@ Release Notes
 
 |Ontology|Version|
 | :---: | :---: |
-|UBERON|2023-09-05|
+|CL|2023-10-19|
+|UBERON|2023-10-27|
 |PCL|2023-02-27|
-|CL|2023-09-21|
 
 ### ASCT+b Tables
 

diff --git a/docs/Anatomical_Systems/README.md b/docs/Anatomical_Systems/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2023-11-01)
+ASCT+B Validation Reports for Anatomical_Systems (2023-11-08)
 =============================================================
 
 Table of contents

diff --git a/docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf b/docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf
diff --git a/docs/Anatomical_Systems/graph.md b/docs/Anatomical_Systems/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2023-11-01)
+ASCT+B Validation Reports for Anatomical_Systems (2023-11-08)
 =============================================================
 
 # ASCT+B as Graph

diff --git a/docs/Anatomical_Systems/report_images_Anatomical_Systems.tsv b/docs/Anatomical_Systems/report_images_Anatomical_Systems.tsv
@@ -1,18 +1,2 @@
 term	image_url
-UBERON:0000945	https://upload.wikimedia.org/wikipedia/commons/e/e0/Stomach_diagram.svg
-UBERON:0001004	http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg
-UBERON:0001009	http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg
-UBERON:0001043	http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg
-UBERON:0001557	http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
-UBERON:0001557	http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg
-UBERON:0001558	http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg
-UBERON:0001558	http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
-UBERON:0001911	http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg
-UBERON:0002049	http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg
-UBERON:0002097	http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg
-UBERON:0002106	https://upload.wikimedia.org/wikipedia/commons/d/d6/Illu_spleen.jpg
-UBERON:0002107	https://upload.wikimedia.org/wikipedia/commons/6/64/Leber_Schaf.jpg
-UBERON:0002108	http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg
-UBERON:0002370	https://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg
-UBERON:0002371	http://upload.wikimedia.org/wikipedia/commons/7/74/Gray72-en.svg
-UBERON:0002407	http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png
+
diff --git a/docs/Blood/README.md b/docs/Blood/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2023-11-01)
+ASCT+B Validation Reports for Blood (2023-11-08)
 ================================================
 
 Table of contents
@@ -138,7 +138,7 @@ In the case of the CT-CT relationship, for each couple of terms, we verify for _
 
 |    | row_number                                                                                                               | s          | slabel                                                | user_slabel                       | o          | olabel                | user_olabel              |   deltaIC |
 |----|--------------------------------------------------------------------------------------------------------------------------|------------|-------------------------------------------------------|-----------------------------------|------------|-----------------------|--------------------------|-----------|
-|  0 | [20](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=20:20) | CL:0000840 | immature conventional dendritic cell                  | transitional Dendritic Cell (tDC) | CL:0001056 | dendritic cell, human | dendritic cell (DC)      |   11.2833 |
+|  0 | [20](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=20:20) | CL:0000840 | immature conventional dendritic cell                  | transitional Dendritic Cell (tDC) | CL:0001056 | dendritic cell, human | dendritic cell (DC)      |   11.2806 |
 |  5 | [16](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=16:16) | CL:0002394 | CD141-positive myeloid dendritic cell                 | dendritic cell type 1 (DC1)       | CL:0001056 | dendritic cell, human | dendritic cell (DC)      |  nan      |
 |  7 | [17](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=17:17) | CL:0002399 | CD1c-positive myeloid dendritic cell                  | dendritic cell type 2 (DC2)       | CL:0001056 | dendritic cell, human | dendritic cell (DC)      |  nan      |
 |  9 | [18](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=18:18) | CL:0002399 | CD1c-positive myeloid dendritic cell                  | dendritic cell type 3 (DC3)       | CL:0001056 | dendritic cell, human | dendritic cell (DC)      |  nan      |

diff --git a/docs/Blood/assets/ccf_Blood_graph.pdf b/docs/Blood/assets/ccf_Blood_graph.pdf
diff --git a/docs/Blood/class_Blood_log.tsv b/docs/Blood/class_Blood_log.tsv
@@ -1,5 +1,5 @@
 row_number	s	slabel	user_slabel	o	olabel	user_olabel	deltaIC
-20	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell (tDC)	CL:0001056	dendritic cell, human	dendritic cell (DC)	11.283330277915738
+20	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell (tDC)	CL:0001056	dendritic cell, human	dendritic cell (DC)	11.280630035135573
 12	CL:0000816	immature B cell	immature B cell	UBERON:0000178	Blood	Blood	
 13	CL:0000787	memory B cell	memory B cell	UBERON:0000178	Blood	Blood	
 14	CL:0000788	naive B cell	naive B cell	UBERON:0000178	Blood	Blood	

diff --git a/docs/Blood/graph.md b/docs/Blood/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2023-11-01)
+ASCT+B Validation Reports for Blood (2023-11-08)
 ================================================
 
 # ASCT+B as Graph