Fix azimuth model downloading

hubmapconsortium · Feb 22, 2024 · b08ebcf · b08ebcf
1 parent 978d781
commit b08ebcf
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/containers/azimuth/context/download_reference_data.R b/containers/azimuth/context/download_reference_data.R
@@ -8,6 +8,7 @@ output_dir <- args[2]
 
 # Load unique reference organs
 metadata <- fromJSON(file = organ_metadata_file)
+metadata <- metadata[sapply(metadata, is.list)] # Remove redirection links
 references <- unique(sapply(metadata, function(item) item$model))
 
 # Download and install data