Python3 fix - Popen.stdout is byte stream by default

huwjenkins · Apr 14, 2020 · 7024236 · 7024236
1 parent 35a1a98
commit 7024236
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/fragon/score.py b/fragon/score.py
@@ -91,7 +91,7 @@ def run_acorn(mtzin, xyzin, mtzout, lowres, highres, solvent, acorn_script, acor
 
   acorn_command = shlex.split('acorn hklin %s xyzin %s hklout %s' % (mtzin, xyzin, mtzout))
   with open(acorn_script, 'r') as com, open(acorn_logfile, 'w') as acorn_log:
-    acorn = subprocess.Popen(acorn_command, stdin=com, stdout=subprocess.PIPE)
+    acorn = subprocess.Popen(acorn_command, stdin=com, stdout=subprocess.PIPE, universal_newlines=True)
     per_cycle = []
     while True:
       line = acorn.stdout.readline()

diff --git a/fragon/version.py b/fragon/version.py
@@ -1,2 +1,2 @@
 from __future__ import absolute_import, division, print_function
-__version__ = '0.2.5'
+__version__ = '0.2.6'