Add GPML import/export support

iVis-at-Bilkent · Jan 31, 2024 · 1d310bb · 1d310bb
1 parent a572e63
commit 1d310bb
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Showing 4 changed files with 6,140 additions and 4,244 deletions.
diff --git a/app/js/app-menu.js b/app/js/app-menu.js
@@ -363,9 +363,11 @@ module.exports = function() {
     $("#import-experimental-data").click(function () {
       $("#overlay-data").trigger('click');
     });
+
     $("#import-SBML-file").click(function () {
       $("#sbml-file").trigger('click');
     });
+
     $("#import-simple-af-file").click(function () {
       $("#simple-af-file-input").trigger('click');
     });
@@ -382,6 +384,10 @@ module.exports = function() {
       $("#sif-layout-input").trigger('click');
     });
 
+    $("#import-GPML-file").click(function () {
+      $("#gpml-file-input").trigger('click');
+    });
+
     $("#overlay-data").change(function () {
       var chiseInstance = appUtilities.getActiveChiseInstance();
       var cy = appUtilities.getActiveCy();
@@ -461,6 +467,34 @@ module.exports = function() {
         $(this).val("");
       }
     });
+
+    $("#gpml-file-input").change(function () {
+
+      var chiseInstance = appUtilities.getActiveChiseInstance();
+      var cy = appUtilities.getActiveCy();
+      if ($(this).val() != "") {
+        var file = this.files[0];
+        appUtilities.setFileContent(file.name);
+        chiseInstance.loadGpml(file,  success = function(data){
+          if (cy.elements().length !== 0) {
+            promptConfirmationView.render(function () {
+              chiseInstance.loadSBGNMLText(data.message, false, file.name, cy);
+            });
+          }
+          else {
+            chiseInstance.loadSBGNMLText(data.message, false, file.name, cy);
+          }
+        },
+        error = function(data){
+          promptFileConversionErrorView.render();          
+          document.getElementById("file-conversion-error-message").innerText = "Conversion service is not available!";
+
+        });
+
+        $(this).val("");
+      }
+    });
+
     $("#simple-af-file-input").change(function () {
       var chiseInstance = appUtilities.getActiveChiseInstance();
 
@@ -1333,14 +1367,19 @@ module.exports = function() {
     $("#export-as-sbgnml-plain-file").click(function (evt) {
       fileSaveView.render("sbgn", "plain");
     });
+
     $("#export-as-sbgnml3-plain-file").click(function (evt) {
       fileSaveView.render("sbgn", "plain3");
     });
 
-   $("#export-as-sbml").click(function (evt) {
-    fileSaveView.render("sbml", null, null);
-
+    $("#export-as-sbml").click(function (evt) {
+      fileSaveView.render("sbml", null, null);
     });
+
+    $("#export-as-gpml").click(function (evt) {
+      fileSaveView.render("gpml", null, null);
+    });    
+
     $("#add-complex-for-selected").click(function (e) {
 
       // use active chise instance