3.1.6-3.7.0

What's Changed

• update song/score modules version
• add defaults to song/score containers and versions
• update payload-gen-variant-calling to remove sensitive metrics
• update build-test-release.yml

Full Changelog: 3.1.6-3.6.0...3.1.6-3.7.0

sanger-wxs-variant-calling.v3.1.6-3.7.0

• Release sanger-wxs-variant-calling.v3.1.6-3.7.0 (657a804)
• Package sanger-wxs-variant-calling.v3.1.6-3.7.0.tar.gz (sha256: 5a447f8ceb67b2d1b28ebc2b9a1a24bfb1189ee93aa46b2c09695ea5c12dbdce)
• Package URI github.com/icgc-argo-workflows/sanger-wxs-variant-calling/[email protected]
• Run the package: nextflow run icgc-argo-workflows/sanger-wxs-variant-calling/sanger-wxs-variant-calling/main.nf -r sanger-wxs-variant-calling.v3.1.6-3.7.0 -params-file <params-json-file>

3.1.6-3.6.0

• updated to use [email protected]

Note:

• compatible argo-metadata-schema versions: 0.4.0, 0.5.0
• requires Nextflow 20.10.0 or higher

sanger-wxs-variant-calling.v3.1.6-3.6.0

• Release sanger-wxs-variant-calling.v3.1.6-3.6.0 (7b77703)
• Package sanger-wxs-variant-calling.v3.1.6-3.6.0.tar.gz (sha256: 32299d3bcab83d2bcdfbe36211d9e341c1bb9c68f1a01b0d6cb969e0e9871029)

3.1.6-3.5.0

• updated to use [email protected] with update to data_subtypes

Note:

1. compatible argo-metadata-schema versions: 0.4.0, 0.5.0
2. requires Nextflow 20.07.1 or higher

sanger-wxs-variant-calling.v3.1.6-3.5.0

• Release sanger-wxs-variant-calling.v3.1.6-3.5.0 (5b08d57)
• Package sanger-wxs-variant-calling.v3.1.6-3.5.0.tar.gz (sha256: 7c051eed4dc56b938bea4818e385833ac3d9e901430abe684316097c6754ddda)

3.1.6-3.4.0

• updated to use [email protected] that supports updated data category/type/subtype and analysis tools, and pass info.origin field from input analysis to generated payload

Note:

1. compatible argo-metadata-schema versions: 0.4.0, 0.5.0
2. requires Nextflow 20.07.1 or higher

sanger-wxs-variant-calling.v3.1.6-3.4.0

• Release sanger-wxs-variant-calling.v3.1.6-3.4.0 (ab7b010)
• Package sanger-wxs-variant-calling.v3.1.6-3.4.0.tar.gz (sha256: c087166df1ba52cfd0ea801ef867ae92c030373989d7e4ffe75a6cd704cd1fcb)

3.1.6-3.3.0

• switched to use [email protected] that supports retry on song/score temporary failures
• switched to use [email protected] that supports retry on song/score temporary failures

Note:

1. compatible argo-metadata-schema versions: 0.4.0, 0.5.0
2. requires Nextflow 20.07.1 or higher

sanger-wxs-variant-calling.v3.1.6-3.3.0

• Release sanger-wxs-variant-calling.v3.1.6-3.3.0 (edb52a6)
• Package sanger-wxs-variant-calling.v3.1.6-3.3.0.tar.gz (sha256: c53f52e856da4ecf4ac03247c656a63beb8e0e93d8156ce287d222056df69447)