2.11.0

What's Changed

• Implemented support for reference genomes compressed with the BGZIP by @PSB-mibel in #1452
• Many improvements to interaction tracks by @cheehongsg in #1445 and #1447
• bug fix - IGV js hangs parsing malformed query parameters in URL by @eyal-elkevity in #1461

New Contributors

• @cheehongsg made their first contribution in #1445
• @eyal-elkevity made their first contribution in #1461
• @PSB-mibel made their first contribution in #1452

Full Changelog: v2.10.5...v2.11.0

2.10.5

What's Changed

• Miscellaneous changes to support JBrowse circular view integration
• Title background in multi-locus view is now colored to reflect chromosome of the region
• add clickToHighlight to gCNV track by @jethror1 in #1429
• Track Gear Menu width restriction removed. by @turner in #1433
• Center position fix -- fixes #1438 by @turner in #1439
• Wrong last sequence in the overview -- see #1423 by @turner in #1435
• Multi-locus view. Better close button legibility. by @turner in #1442

New Contributors

• @jethror1 made their first contribution in #1429

Full Changelog: v2.10.4...v2.10.5

2.10.4

What's Changed

Bug Fixes

• #1406 - Popup broken and rendering issues for splice junction track
• #1410 - Browser hangs when zooming in on large simple (no exon) bed features

Full Changelog: v2.10.2...v2.10.4

2.10.2

What's Changed

Bug Fixes

• #1382 - zoom slider not working in Firefox and Safari
• #1386 - error when removing a browser.
• #1389 - list of sequences not cleared when changing genome
• #1388 - browser.toSVG() returns a Promise
• #1397 - showCenterGuide option is ignored
• #1400 - browser.zoomIn(), browser.zoomOut() methods restored
• #1395. - SVG output broken for interaction (arc) tracks
• #1392 - fail quickly if missing initial locus by @alfonsogarciacaro
• #1379 - rulerViewport: check tooltip defined in mouseMove/setTimeout by @f-krull

New Features

• New option to search for features based on GFF column 9 fields.

New Contributors

• @f-krull made their first contribution in #1379
• @alfonsogarciacaro made their first contribution in #1392

Full Changelog: v2.10.1...v2.10.2

2.10.0

New features

• Exon numbers are now displayed in feature popup text (issue #922)
• URL linkouts for feature tracks can now be specified in the track configuration or track line (issue #430)
• Expanded support for GFF features, including popup text for composite feature parts (exon, CDS, UTR, etc).

Bug fixes

• svg of +/- bedgraph lacks the zero line (issue #1332)
• currentLoci() slightly off (issue #1334)
• issues with info popup for "mut" files (issue #1350)
• errors when loading bam and bigwig files via data URLS (issue #1359 and #1366)

2.9.4

Packaging change -- igv-ui and igv-utils are now "devDependencies" as they are not needed at runtime.

2.9.3

Bug Fixes

• Add standard alignment filters for CRAM files (including filter duplicates). Fixes #1323

New Features

• Add "sort by read name" to alignment track menus

2.9.2

Bug Fixes

• Various htsget bugs

New Features

• Extend color-by options for variants (VCF tracks)

2.9.1

Bug Fix

• Round genomic coordinates to integers before querying htsget server to avoid "400" error

2.9.0

New Features

• Add support for htsget BAM and VCF endpoints.