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Multi-bunch plotting capabilities#11

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mattachu wants to merge 37 commits intoimpact-lbl:masterimpact-lbl/IMPACT-T:masterfrom mattachu:feature/gui/multi-bunchmattachu/IMPACT-T:feature/gui/multi-bunchCopy head branch name to clipboard

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Commits on Nov 8, 2019

• Fix line endings

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Commits on Dec 19, 2019

• Adjust diagnostic1_Output to produce stats files for a single bunch

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• Call diagnostic1_Output for each bunch

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• Add button to make Overall plots for a single bunch

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Commits on Dec 24, 2019

• Updated Overall plots for single and multiple bunches

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• Add per-bunch plots for emittance growth

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Commits on Dec 31, 2019

• Add per-bunch output and x-axis selection to base class PlotBaseFrame

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• Changes to emittance plot class to use new base class functionality

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• Changes to temperature plot class to use new base class functionality

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• Changes to PlotFrame class to use new base class functionality

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• Changes to overall plot class to use new base class functionality

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• Changes to higher order plot class to use new base class functionality

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Commits on Jan 2, 2020

• Fix maximum z statistics for per-bunch output

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Commits on Apr 14, 2020

• Replace deprecated NavigationToolbar2TkAgg with NavigationToolbar2Tk

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• Replace deprecated show method with draw method

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• Fix mixed usage of subfig and self.subfig

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• Merge branch 'fix/gui/dependencies' into feature/gui/multi-bunch

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• Merge branch 'fix/gui/line-endings' into feature/gui/multi-bunch

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• Merge branch 'feature/bunch-output' into feature/gui/multi-bunch

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• Multi-bunch plotting capabilities

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Commits on Apr 17, 2020

• Handle cases with less bunches than expected in multi-bunch plots

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Commits on May 26, 2020

• Add option to include a z-offset in multi-bunch plots

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Commits on Jun 2, 2020

• Use the full momentum to calculate the energy for multi-bunch plots

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Commits on Jul 14, 2020

• Expand divergence calculation to include large angles

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Commits on Jul 31, 2020

• Handle some minor errors

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Commits on Nov 27, 2020

• Fix incorrect file number in MultiBunchPlot.py

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Commits on Jan 28, 2021

• Error handling for empty bunches in multi-bunch plot script

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• Split phase space plotting into new method

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Commits on Feb 2, 2021

• Enhanced handling of empty bunches for concatenation

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Commits on Feb 3, 2021

• Get z_offset from input file rather than requiring user input

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• Add optional highlighting of target energy range

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Commits on Mar 29, 2021

• Read target range from input file for plotting

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Commits on Mar 30, 2021

• Add energy filtering to GUI

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Commits on Mar 31, 2021

• Allow target range plotting even if distance filtering is switched off

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Commits on May 4, 2021

• Handle single-bunch plots more gracefully

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• Add plot for beam size vs time

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• Add plot of z vs t for bunch motion

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