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better media output names
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wlangera committed Oct 24, 2024
1 parent 504b864 commit 38cd405
Showing 1 changed file with 27 additions and 24 deletions.
51 changes: 27 additions & 24 deletions source/markdown/exploratie_polders_zandstreek_2024.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,7 @@ conflicted::conflicts_prefer(dplyr::lag)
# Paths
data_path <- here("data", "mas")
media_folder <- here("media", "exploratie_2024")
media_folder <- here("media", "exploratie_pl_zn_2024")
dir.create(media_folder, showWarnings = FALSE)
devices <- c("pdf", "png")
Expand Down Expand Up @@ -108,7 +108,8 @@ summary_vogels_2024 <- mas_2024_vogels %>%
) %>%
arrange(regio, jaar, openheid_klasse, sbp)
write_csv(summary_vogels_2024, here(media_folder, "summary_vogels_2024.csv"))
write_csv(summary_vogels_2024, here(media_folder,
"summary_vogels_pl_zn_2024.csv"))
summary_vogels_2024 %>%
kable()
Expand All @@ -133,7 +134,7 @@ p <- mas_2024_vogels %>%
facet_wrap(~regio) +
labs(x = "Telperiode", y = "Totaal aantal telpunten")
save_figure(p, here(media_folder, "tellingen_vogels_2024"), devices,
save_figure(p, here(media_folder, "tellingen_vogels_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand Down Expand Up @@ -166,7 +167,7 @@ p <- mas_2024_vogels %>%
geom_boxplot() +
labs(x = "Telperiode", y = "Aantal soorten per telpunt", fill = "Regio")
save_figure(p, here(media_folder, "soorten_vogels_2024"), devices,
save_figure(p, here(media_folder, "soorten_vogels_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand All @@ -185,7 +186,7 @@ p <- mas_2024_vogels %>%
facet_wrap(~regio) +
labs(x = "Telperiode", y = "Aantal waarnemingen per telpunt")
save_figure(p, here(media_folder, "waarnemingen_vogels_2024"), devices,
save_figure(p, here(media_folder, "waarnemingen_vogels_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand Down Expand Up @@ -418,7 +419,7 @@ cum_p2 <- cum_aantal_spec_strat %>%
# Combine cumulative species plots
p <- gridExtra::grid.arrange(cum_p1, cum_p2)
save_figure(p, here(media_folder, "cum_soorten_vogels_2024"), devices,
save_figure(p, here(media_folder, "cum_soorten_vogels_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 8
)
```
Expand Down Expand Up @@ -452,7 +453,7 @@ p <- mas_2024_vogels %>%
labs(y = "Aantal soorten per telpunt", x = "", colour = "Telperiode")
save_figure(p, here(media_folder, "aantal_soorten_vogels_strat_2024"), devices,
save_figure(p, here(media_folder, "aantal_soorten_vogels_strat_pl_zn_2024"), devices,

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file=source/markdown/exploratie_polders_zandstreek_2024.Rmd,line=456,col=81,[line_length_linter] Lines should not be more than 80 characters. This line is 85 characters.
dpi = 300, width = 8, height = 6
)
Expand Down Expand Up @@ -593,7 +594,8 @@ relfreq_vogels_regio <- relfreqs_vogels %>%
rownames_to_column(var = "rang") %>%
mutate(rang = as.numeric(rang))
write_csv(relfreq_vogels_regio, here(media_folder, "relfreq_vogels_regio.csv"))
write_csv(relfreq_vogels_regio, here(media_folder,
"relfreq_vogels_pl_zn_2024.csv"))
# Get 20 most frequent species or goal species
relfreq_vogels_regio %>%
Expand Down Expand Up @@ -640,7 +642,7 @@ p <- freq_to_plot %>%
) +
guides(colour = guide_legend(override.aes = list(size = 2)))
save_figure(p, here(media_folder, "vogelfreqs_2024"), devices,
save_figure(p, here(media_folder, "vogelfreqs_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand Down Expand Up @@ -692,7 +694,7 @@ relfreqs_vogels %>%
rownames_to_column(var = "rang") %>%
mutate(rang = as.numeric(rang)) %>%
select(rang, naam, Zandstreek, Polders, verschilfreq) %>%
write_csv(here(media_folder, "relfreq_vogels_diff.csv"))
write_csv(here(media_folder, "relfreq_vogels_diff_pl_zn_2024.csv"))
```

```{r}
Expand Down Expand Up @@ -909,7 +911,7 @@ p <- relfreq_diff_total %>%
size = 2, hjust = "right", colour = "black", angle = 90
)
save_figure(p, here(media_folder, "vogelfreqs_diff_2024"), devices,
save_figure(p, here(media_folder, "vogelfreqs_diff_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand Down Expand Up @@ -943,7 +945,8 @@ relfreq_vogels_ratio <- relfreqs_vogels %>%
ratio_lm_zn = 1 / ratiofreq) %>%
select(rang, naam, Zandstreek, Polders, ratio_zn_lm, ratio_lm_zn)
write_csv(relfreq_vogels_ratio, here(media_folder, "relfreq_vogels_ratio.csv"))
write_csv(relfreq_vogels_ratio, here(media_folder,
"relfreq_vogels_ratio_pl_zn_2024.csv"))
```

```{r}
Expand Down Expand Up @@ -1004,7 +1007,7 @@ p <- relfreq_ratio_zn %>%
) +
guides(colour = guide_legend(override.aes = list(size = 3)))
save_figure(p, here(media_folder, "vogelfreqs_ratio_zn_lm_2024"), devices,
save_figure(p, here(media_folder, "vogelfreqs_ratio_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand Down Expand Up @@ -1080,7 +1083,7 @@ p <- relfreq_ratio_lm %>%
) +
guides(colour = guide_legend(override.aes = list(size = 3)))
save_figure(p, here(media_folder, "vogelfreqs_ratio_lm_zn_2024"), devices,
save_figure(p, here(media_folder, "vogelfreqs_ratio_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand Down Expand Up @@ -1160,7 +1163,7 @@ p <- relfreqs_vogels %>%
theme(legend.position = "top") +
guides(colour = guide_legend(override.aes = list(size = 2)))
save_figure(p, here(media_folder, "vogelfreqs_2024_doelsoorten"), devices,
save_figure(p, here(media_folder, "vogelfreqs_pl_zn_2024_doelsoorten"), devices,
dpi = 300, width = 8, height = 7
)
Expand Down Expand Up @@ -1196,7 +1199,7 @@ summary_zoogdieren_2024 <- mas_2024_zoogdieren %>%
arrange(regio, jaar, openheid_klasse, sbp)
write_csv(summary_zoogdieren_2024,
here(media_folder, "summary_zoogdieren_2024.csv"))
here(media_folder, "summary_zoogdieren_pl_zn_2024.csv"))
summary_zoogdieren_2024 %>%
kable()
Expand All @@ -1214,7 +1217,7 @@ p <- mas_2024_zoogdieren %>%
facet_wrap(~regio) +
labs(x = "Telperiode", y = "Aantal waarnemingen per telpunt")
save_figure(p, here(media_folder, "waarnemingen_zoogdieren_2024"), devices,
save_figure(p, here(media_folder, "waarnemingen_zoogdieren_pl_zn_2024"), devices,

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file=source/markdown/exploratie_polders_zandstreek_2024.Rmd,line=1220,col=81,[line_length_linter] Lines should not be more than 80 characters. This line is 81 characters.
dpi = 300, width = 8, height = 6
)
Expand Down Expand Up @@ -1408,7 +1411,7 @@ cum_p2 <- cum_aantal_spec_strat %>%
# Combine cumulative species plots
p <- gridExtra::grid.arrange(cum_p1, cum_p2)
save_figure(p, here(media_folder, "cum_soorten_zoogdieren_2024"), devices,
save_figure(p, here(media_folder, "cum_soorten_zoogdieren_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 8
)
```
Expand Down Expand Up @@ -1503,7 +1506,7 @@ relfreq_zoogdieren_regio <- relfreqs_zoogdieren %>%
write_csv(
relfreq_zoogdieren_regio,
here(media_folder, "relfreq_zoogdieren_regio.csv")
here(media_folder, "relfreq_zoogdieren_pl_zn_2024.csv")
)
relfreq_zoogdieren_regio %>%
Expand Down Expand Up @@ -1542,7 +1545,7 @@ p <- freq_to_plot %>%
) +
guides(colour = guide_legend(override.aes = list(size = 2)))
save_figure(p, here(media_folder, "zoogdierfreqs_2024"), devices,
save_figure(p, here(media_folder, "zoogdierfreqs_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand Down Expand Up @@ -1577,7 +1580,7 @@ relfreqs_zoogdieren_diff <- relfreqs_zoogdieren %>%
write_csv(
relfreqs_zoogdieren_diff,
here(media_folder, "relfreq_zoogdieren_diff.csv")
here(media_folder, "relfreq_zoogdieren_diff_pl_zn_2024.csv")
)
relfreqs_zoogdieren_diff %>%
Expand Down Expand Up @@ -1655,7 +1658,7 @@ p <- relfreq_diff_zn %>%
size = 2, hjust = "right", colour = "black"
)
save_figure(p, here(media_folder, "zoogdierfreqs_diff_2024"), devices,
save_figure(p, here(media_folder, "zoogdierfreqs_diff_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand Down Expand Up @@ -1686,7 +1689,7 @@ p <- mas_2024_zoogdieren %>%
facet_wrap(~landbouwstreek) +
labs(y = "Totaal aantal individuen", x = "Telperiode", fill = "Jaar")
save_figure(p, here(media_folder, "aantal_hazen_2024"), devices,
save_figure(p, here(media_folder, "aantal_hazen_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand All @@ -1709,7 +1712,7 @@ p <- relfreqs_zoogdieren %>%
facet_grid(~landbouwstreek) +
theme(legend.position = "top")
save_figure(p, here(media_folder, "relfreq_haas_2024"), devices,
save_figure(p, here(media_folder, "relfreq_haas_pl_zn_2024"), devices,
dpi = 300, width = 8, height = 6
)
Expand Down

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