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add manual taxon mapping
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wlangera committed Oct 17, 2024
1 parent 98a3d95 commit 8faff63
Showing 1 changed file with 7 additions and 3 deletions.
10 changes: 7 additions & 3 deletions source/targets/data_preparation/_targets.R
Original file line number Diff line number Diff line change
Expand Up @@ -239,9 +239,13 @@ list(
command = map_taxa_manual(
taxonomy_df = taxon_mapping,
manual_taxon_list = list(
"Veldmuis/Aardmuis" = 2438591, # genus
"rat spec." = 2439223, # genus
"spitsmuis spec." = 5534 # family
"Huismuis (zoogdier)" = 7429082, # species
"Barmsijs (Grote of Kleine)" = 6782561, # genus
"Veldmuis/Aardmuis" = 2438591, # genus
"Wezel/Hermelijn" = 2433922, # genus
"groene kikker-complex" = 2426629, # genus
"rat spec." = 2439223, # genus
"spitsmuis spec." = 5534 # family
),
vernacular_name_col = "dwc_vernacularName",
out_cols = c("scientificName", "phylum", "order", "family", "genus",
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