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Fix some more deprecations from primitives #1636

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Run time

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Job	Run time
Pylint	3m 0s
Ruff	9s
Examples	4m 25s
Documentation	2m 31s
Mypy	2m 35s
Pytest Linux	4m 26s
Pytest Mac	4m 28s
Pytest with SymEngine	4m 26s
Typos	4s
	26m 4s