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Fix some more deprecations from primitives #1638

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Run time

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Job	Run time
Ruff	8s
Ruff	5s
Mypy	2m 54s
Mypy	2m 54s
Examples	11m 43s
Examples	11m 43s
Pylint	3m 5s
Pylint	3m 4s
Pytest Mac	25m 12s
Pytest Mac	25m 12s
Pytest with SymEngine	53m 6s
Pytest with SymEngine	53m 6s
Typos	3s
Typos	3s
Documentation	2m 35s
Documentation	2m 35s
Pytest Linux	53m 9s
Pytest Linux	53m 9s
	5h 3m 46s