Merge pull request #324 from insightsengineering/cran-release

Cran release

.Rbuildignore

@@ -16,4 +16,8 @@
 
 ^CRAN-SUBMISSION$
 ^cran-comments\.md$
-^.vscode$
+^.vscode$
+
+^.*\.tar\.gz$
+^.*\.Rcheck$
+

.github/actions/rcmdcheck/action.yml

@@ -0,0 +1,42 @@
+
+name: 'Build src'
+description: 'Build src!'
+inputs:
+  slim:
+    description: 'Should the reduced set of checks be run'
+    default: false
+runs:
+  using: "composite"
+  steps:
+    - name: Build R package
+      shell: bash
+      run: |
+        R CMD build .
+      
+    - name: Run R CMD check
+      env:
+        _R_CHECK_CRAN_INCOMING_: false
+        _R_CHECK_CRAN_INCOMING_REMOTE_: false
+      shell: bash
+      run: |
+        echo "inputs.slim = ${{ inputs.slim }}"
+        if ${{ inputs.slim }} ; then
+          R CMD check --no-manual --no-build-vignettes --no-vignettes --ignore-vignettes *.tar.gz
+        else
+          R CMD check --no-manual --as-cran *.tar.gz
+        fi
+
+    - name: Catch warnings in R CMD check output
+      id: catch-errors
+      shell: Rscript {0}
+      run: |
+        check_dir <- grep("*\\.Rcheck$", list.dirs(), value = TRUE)
+        check_log <- sprintf("%s/00check.log", check_dir)
+        if (file.exists(check_log)) {
+            x <- tail(readLines(check_log), 1)
+            if (!grepl("^Status", x)) stop("No status line found in R CMD check log")
+            if (grepl("ERROR", x)) stop("R CMD check has errors")
+            if (grepl("WARNING", x)) stop("R CMD check has warnings")
+        } else {
+            stop("Could not find check log")
+        }

.github/workflows/build_docker.yaml

@@ -1,19 +1,9 @@
-name: Deploy image to GHCR
+name: Build fixed version Docker images
 
 env:
   REGISTRY: ghcr.io
 
 on:
-  push:
-    branches:
-      - main
-    paths:
-      - 'misc/docker/**'
-  pull_request:
-    branches:
-      - main
-    paths:
-      - 'misc/docker/**'
   workflow_dispatch:
 
 
@@ -79,7 +69,7 @@ jobs:
         uses: docker/build-push-action@v2
         with:
           context: ./misc/docker
-          push: ${{ github.event_name == 'push' }}
+          push: true
           tags: ${{ env.REGISTRY }}/${{ github.repository_owner }}/${{ matrix.config.tag }}
           build-args: |
             IMAGE=${{ matrix.config.src_image }}

.github/workflows/build_docker_latest.yaml

@@ -0,0 +1,83 @@
+name: Build latest version Docker images
+
+env:
+  REGISTRY: ghcr.io
+
+on:
+  schedule:
+    - cron: '0 5 1,15 * *'
+  workflow_dispatch:
+
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    name: Build & Deploy Docker Images
+
+
+    strategy:
+      fail-fast: true
+      matrix:
+        config:
+          - {
+              src_image: "rocker/r-ver:latest", 
+              cran_url: "https://packagemanager.rstudio.com/cran/latest",
+              tag: "rbmi:latest"
+            }
+
+    # Token permissions
+    permissions:
+      contents: read
+      packages: write
+
+    # Build steps
+    steps:
+      - name: Checkout repository 
+        uses: actions/checkout@v2
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v1
+        id: buildx
+        with:
+          install: true
+
+      - name: Log in to the Container registry
+        uses: docker/login-action@v1
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Cache Docker layers
+        uses: actions/cache@v2
+        with:
+          path: /tmp/.buildx-cache
+          key: docker-cache-${{ matrix.config.tag }}
+
+
+      - name: debug
+        run: |
+          echo push = ${{ github.event_name == 'push' }}
+          echo tag = ${{ env.REGISTRY }}/${{ github.repository_owner }}/${{ matrix.config.tag }}
+          echo IMAGE=${{ matrix.config.src_image }}
+          echo CRANURL=${{ matrix.config.cran_url }}
+
+      - name: Build and push image 
+        uses: docker/build-push-action@v2
+        with:
+          context: ./misc/docker
+          push: true
+          tags: ${{ env.REGISTRY }}/${{ github.repository_owner }}/${{ matrix.config.tag }}
+          build-args: |
+            IMAGE=${{ matrix.config.src_image }}
+            CRANURL=${{ matrix.config.cran_url }}
+          cache-from: type=local,src=/tmp/.buildx-cache
+          cache-to: type=local,dest=/tmp/.buildx-cache-new
+
+      # Fix bug where docker cache just continiously grows as it doesn't purge older layers
+      # That are no longer in use
+      # https://github.com/docker/build-push-action/blob/master/docs/advanced/cache.md#local-cache
+      - name: Move cache
+        run: |
+          rm -rf /tmp/.buildx-cache
+          mv /tmp/.buildx-cache-new /tmp/.buildx-cache

.github/workflows/on_pr_cran.yaml

@@ -50,13 +50,11 @@ jobs:
           cache-version: 2
           extra-packages: |
             remotes
-            rcmdcheck
 
       - name: Install Pandoc
         uses: r-lib/actions/setup-pandoc@v1
 
       - name: Check
-        run: |
-          options(crayon.enabled = TRUE)
-          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning")
-        shell: Rscript {0}
+        uses: ./.github/actions/rcmdcheck
+        with:
+          slim: false

.github/workflows/on_pr.yaml → .github/workflows/on_pr_main.yaml

@@ -1,9 +1,11 @@
 
 
-on: 
+on:
   pull_request:
     paths-ignore:
       - 'misc/**'
+    branches:
+      - main
 
 name: On Pull Request
 
@@ -17,32 +19,25 @@ jobs:
        config:
          - { image: "ghcr.io/${{ github.repository_owner }}/rbmi:r404"}
          - { image: "ghcr.io/${{ github.repository_owner }}/rbmi:r410"}
-
-
     runs-on: ubuntu-latest
-
     container:
       image: ${{ matrix.config.image }}
-
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_TEST_NIGHTLY: 'FALSE'
-
     steps:
       - name: Checkout
         uses: actions/checkout@v2
-
-
+
       - name: Build src
         uses: ./.github/actions/build-src
-      
+
       - name: Check
-        run: |
-          options(crayon.enabled = TRUE)
-          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning")
-        shell: Rscript {0}
-
-
+        uses: ./.github/actions/rcmdcheck
+        with:
+          slim: true
+
+
   vignettes:
     strategy:
       fail-fast: true
@@ -56,6 +51,10 @@ jobs:
     steps:
       - name: Checkout
         uses: actions/checkout@v2
-      - name: testthat
+
+      - name: Build src
+        uses: ./.github/actions/build-src
+
+      - name: Build Vignettes
         run: |
           Rscript ./vignettes/build.R