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Updated for release 52
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@rachellyne
rachellyne authored Sep 20, 2021
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<tr>
<td class="leftcol"><h2><p>Genes</p></h2></td>
<td> <i>Drosophila</i> </td>
<td> Genome annotation for D. melanogaster (R6.36), D. ananassae (R1.06), D. erecta (R1.05), D. grimshawi (R1.05), D. mojavensis (R1.04), D. persimilis (R1.3), D. pseudoobscura (R3.04), D. sechellia (R1.3), D. simulans (R2.02), D. virilis (R1.07), D. willistoni (R1.05) and D. yakuba (R1.05).</td>
<td><a href="http://www.flybase.org" target="_new" class="extlink">Flybase</a> - Version FB2021_03</td>
<td> Genome annotation for D. melanogaster (R6.41)</td>
<td><a href="http://www.flybase.org" target="_new" class="extlink">Flybase</a> - Version FB2021_04</td>
<td> Gramates et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/27799470 " target="_new" class="extlink">PubMed: 27799470 </a></td>
<td> <html:link action="/dataCategories" anchor="note1" title="${note1}">#1</html:link></td>
</tr>


<tr>
<td rowspan="4" class="leftcol"><p><h2>Homology</h2></p></td>
<td><i>Drosophila</i></td>
<td>Orthologues and paralogues between the 12 <i>Drosophila</i> genomes.</td>
<td><a href="http://www.flybase.org" target="_new" class="extlink">Flybase</a> - Version FB2021_03</td>
<td>Gramates et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/27799470 " target="_new" class="extlink">PubMed: 27799470</a></td>
<td> &nbsp; </td>
</tr>


<tr>
<td>
<p><i>D. melanogaster</i></p>
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<p><i>S. cerevisiae</i></p>
</td>
<td>Orthologue and paralogue relationships between these organisms</td>
<td><a href="https://www.ncbi.nlm.nih.gov/homologene" target="_new" class="extlink">Homologene</a> - May 2021</td>
<td><a href="https://www.ncbi.nlm.nih.gov/homologene" target="_new" class="extlink">Homologene</a> - September 2021</td>
<td>Agarwala et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/26615191" target="_new" class="extlink">PubMed: 26615191</a></td>
<td> &nbsp; </td>
</tr>
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<td> Protein annotation</td>
<td> <a href="http://www.uniprot.org/" target="_new" class="extlink">UniProt</a> - Release 2021_02</td>
<td> <a href="http://www.uniprot.org/" target="_new" class="extlink">UniProt</a> - Release 2021_03</td>
<td> UniProt Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/27899622 " target="_new" class="extlink">PubMed: 27899622</a></td>
<td> &nbsp;</td>
</tr>
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<p><i>C. elegans</i></p>
</td>
<td> Protein family and domain assignments to proteins</td>
<td> <a href="http://www.ebi.ac.uk/interpro" target="_new" class="extlink">InterPro</a> - Version 85; April 2021</td>
<td> <a href="http://www.ebi.ac.uk/interpro" target="_new" class="extlink">InterPro</a> - Version 86; June 2021</td>
<td> Finn et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/27899635 " target="_new" class="extlink">PubMed: 27899635</a></td>
<td> &nbsp;</td>
</tr>
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<p><i>S. cerevisiae</i></p>
</td>
<td> Interactions from the BioGRID</td>
<td> <a href="http://www.thebiogrid.org" target="_new" class="extlink">BioGRID</a> - 4.4.197; May 2021"</td>
<td> <a href="http://www.thebiogrid.org" target="_new" class="extlink">BioGRID</a> - 4.4.201; September 2021"</td>
<td> Chatr-Aryamontri et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/27980099" target="_new" class="extlink">PubMed:27980099</a></td>
<td> &nbsp;</td>
</tr>
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<td rowspan="2" class="leftcol"><p> <h2>Gene Ontology</h2></p></td>
<td> <i>D. melanogaster</i> </td>
<td> GO annotations </td>
<td> <a href="http://www.geneontology.org" target="_new" class="extlink">Gene Ontology Site</a> - May 2021</td>
<td> <a href="http://www.geneontology.org" target="_new" class="extlink">Gene Ontology Site</a> - September 2021</td>
<td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/10802651" target="_new" class="extlink">PubMed:10802651</a></td>
<td> &nbsp;</td>
</tr>

<tr>
<td> <i>D. melanogaster</i></td>
<td> InterPro domains to GO annotations </td>
<td> <a href="http://www.ebi.ac.uk/interpro" target="_new" class="extlink">InterPro</a> (from <a href="http://www.geneontology.org" target="_new" class="extlink">Gene Ontology Site</a>) - May 2021
<td> <a href="http://www.ebi.ac.uk/interpro" target="_new" class="extlink">InterPro</a> (from <a href="http://www.geneontology.org" target="_new" class="extlink">Gene Ontology Site</a>) - September 2021
</td>
<td> Gene Ontology Consortium - <a href="http://www.ncbi.nlm.nih.gov/pubmed/10802651" target="_new" class="extlink">PubMed:10802651</a>, Mulder et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/17202162" target="_new" class="extlink">PubMed: 17202162</a></td>
<td> &nbsp;</td>
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<tr>
<td> <i>D. melanogaster</i> </td>
<td> Genome-wide RNA_seq Expression Data: raw data produced by modENCODE analysed by FlyBase</td>
<td> <a href="http://www.flybase.org" target="_new" class="extlink">Flybase</a> - Version FB2021_03</td>
<td> <a href="http://www.flybase.org" target="_new" class="extlink">Flybase</a> - Version FB2021_04</td>
<td> Gelbart and Emmert - 2010<a href="http://flybase.org/reports/FBrf0212041.html" target="_new" class="extlink">FlyBase Report</a></td>
<td> &nbsp;</td>
</tr>
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<td rowspan="3" class="leftcol"><p><h2>Regulation</h2></p></td>
<td> <i>D. melanogaster</i> </td>
<td> Transcriptional cis-regulatory modules (CRMs)</td>
<td> <a href="http://redfly.ccr.buffalo.edu" target="_new" class="extlink">REDfly</a> - version 9.4.0; June 2021</td>
<td> <a href="http://redfly.ccr.buffalo.edu" target="_new" class="extlink">REDfly</a> - version 9.5.1; September 2021</td>
<td> Gallo et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/20965965" target="_new" class="extlink">PubMed: 20965965</a></td>
<td> &nbsp;</td>
</tr>

<tr>
<td> <i>D. melanogaster</i> </td>
<td> Transcription factor binding sites</td>
<td> <a href="http://www.flyreg.org" target="_new" class="extlink">REDfly</a> - version 9.4.0; June 2021</td>
<td> <a href="http://www.flyreg.org" target="_new" class="extlink">REDfly</a> - version 9.5.1; September 2021</td>
<td> Bergman et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/20965965" target="_new" class="extlink">PubMed: 20965965</a></td>
<td> &nbsp; </td>
</tr>

<tr>
<td> <i>D. melanogaster</i> </td>
<td> Enhancers</td>
<td> <a href="http://www.flybase.org" target="_new" class="extlink">FlyBase</a> - Version FB2021_03</td>
<td> <a href="http://www.flybase.org" target="_new" class="extlink">FlyBase</a> - Version FB2021_04</td>
<td> Gramates et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/27799470" target="_new" class="extlink">PubMed: 27799470</a></td>
<td> &nbsp;</td>
</tr>
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<td rowspan="2" class="leftcol"><p> <h2>Phenotypes</h2></p></td>
<td> <i>D. melanogaster</i> </td>
<td> Alleles and phenotypes</td>
<td> <a href="http://www.flybase.org" target="_new" class="extlink">FlyBase</a> - Version FB2021_03</td>
<td> <a href="http://www.flybase.org" target="_new" class="extlink">FlyBase</a> - Version FB2021_04</td>
<td> Gramates et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/27799470" target="_new" class="extlink">PubMed: 27799470</a></td>
<td> &nbsp;</td>
</tr>
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<tr>
<td> <p><i>D. melanogaster</i></p></td>
<td> Pathway information and the genes involved in them, inferred through orthologues from Human curated pathways</td>
<td> <a href="http://www.reactome.org/" target="_new" class="extlink">Reactome</a> - version 76; March 2021</td>
<td> <a href="http://www.reactome.org/" target="_new" class="extlink">Reactome</a> - version 77; June 2021</td>
<td>Fabregat et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/29145629" target="_new" class="extlink">PubMed: 29145629</a></td>
<td>&nbsp;</td>
</tr>
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<td class="leftcol"><p><h2>Diseases</h2></p></td>
<td> <i>D. melanogaster</i> </td>
<td> Human disease data set</td>
<td> <a href="http://omim.org" target="_new" class="extlink">OMIM</a> - May 2021</td>
<td> <a href="http://omim.org" target="_new" class="extlink">OMIM</a> - September 2021</td>
<td> Amberger et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/18842627" target="_new" class="extlink">PubMed: 18842627</a></td>
<td> &nbsp;</td>
</tr>
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<td rowspan="5" class="leftcol"><p><h2>Resources</h2></p></td>
<td> <i>D. melanogaster</i> </td>
<td> Artificial deletions</td>
<td> <a href="http://www.flybase.org" target="_new" class="extlink">FlyBase </a> - Version FB2021_03</td>
<td> <a href="http://www.flybase.org" target="_new" class="extlink">FlyBase </a> - Version FB2021_04</td>
<td> Ryder et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/15238529" target="_new" class="extlink">PubMed: 15238529</a></td>
<td> &nbsp;</td>
</tr>

<tr>
<td> <i>D. melanogaster</i> </td>
<td> Insertions </td>
<td> <a href="http://www.flybase.org" target="_new" class="extlink">Flybase</a> - Version FB2021_03</td>
<td> <a href="http://www.flybase.org" target="_new" class="extlink">Flybase</a> - Version FB2021_04</td>
<td> Gramates et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/27799470" target="_new" class="extlink">PubMed: 27799470</a></td>
<td>&nbsp;</td>
</tr>
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<td rowspan="2" class="leftcol"><p><h2>Publications</h2></p></td>
<td> <i>Drosophila</i> </td>
<td> Gene versus publications</td>
<td><a href="http://www.flybase.org" target="_new" class="extlink">Flybase</a> - Version FB2021_03</td>
<td><a href="http://www.flybase.org" target="_new" class="extlink">Flybase</a> - Version FB2021_04</td>
<td> Gramates et al - <a href="http://www.ncbi.nlm.nih.gov/pubmed/27799470" target="_new" class="extlink">PubMed: 27799470</a></td>
<td> &nbsp;</td>
</tr>
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<p><i>C. elegans</i></p>
</td>
<td> Gene versus publications</td>
<td> <a href="http://www.ncbi.nlm.nih.gov" target="_new" class="extlink">NCBI</a> - May 2021</td>
<td> <a href="http://www.ncbi.nlm.nih.gov" target="_new" class="extlink">NCBI</a> - September 2021</td>
<td> &nbsp;</td>
<td> &nbsp;</td>
</tr>
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