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If two indels intersect, then the step that puts all the SNP entries … Test pling #71: Commit 7350d12 pushed by babayagaofficial
March 1, 2024 16:03 9m 1s main
main
March 1, 2024 16:03 9m 1s
Before looking for overlaps, preprocess matches to exclude indels at … Test pling #70: Commit 028c650 pushed by babayagaofficial
February 23, 2024 15:02 9m 35s main
main
February 23, 2024 15:02 9m 35s
Another projection function and indel related fix. Now that in the pr… Test pling #69: Commit 76e2680 pushed by babayagaofficial
February 20, 2024 14:19 8m 51s main
main
February 20, 2024 14:19 8m 51s
Changed the way indels are stored to reduce amount of for loops. Now … Test pling #68: Commit ca2be28 pushed by babayagaofficial
February 20, 2024 11:01 9m 0s main
main
February 20, 2024 11:01 9m 0s
Two indel related fixes: 1) End coordinates of indels were incorrect … Test pling #67: Commit 3e12cd9 pushed by babayagaofficial
February 19, 2024 14:19 10m 8s main
main
February 19, 2024 14:19 10m 8s
type issues with TimeLimit variable in gurobi (was string, needs to b… Test pling #66: Commit 9310c40 pushed by babayagaofficial
February 15, 2024 14:15 8m 56s main
main
February 15, 2024 14:15 8m 56s
added specific version of numpy to install in integerise environment.… Test pling #65: Commit d697217 pushed by babayagaofficial
February 14, 2024 14:12 9m 1s main
main
February 14, 2024 14:12 9m 1s
update to latest version of plasnet Test pling #64: Commit 2ea90f4 pushed by babayagaofficial
February 14, 2024 13:59 12m 39s main
main
February 14, 2024 13:59 12m 39s
fixed bug in coordinate projection function Test pling #63: Commit a4dded7 pushed by babayagaofficial
February 5, 2024 13:44 10m 43s main
main
February 5, 2024 13:44 10m 43s
Fixed bug where show-snps output was not being properly parsed, so no… Test pling #62: Commit ed8ba1e pushed by babayagaofficial
January 31, 2024 13:49 14m 20s main
main
January 31, 2024 13:49 14m 20s
Forgot to remove leftover print command from debugging. Test pling #61: Commit 8dc7b0f pushed by babayagaofficial
January 18, 2024 11:41 3m 0s main
main
January 18, 2024 11:41 3m 0s
Now filter out matches below the length_threshold when reading in the… Test pling #60: Commit 0d3ea46 pushed by babayagaofficial
January 18, 2024 11:39 3m 9s main
main
January 18, 2024 11:39 3m 9s
Merge pull request #52 from iqbal-lab-org/nucmer_block_bug_fix Test pling #59: Commit 7468e18 pushed by babayagaofficial
January 12, 2024 17:51 6m 23s main
main
January 12, 2024 17:51 6m 23s
Nucmer block bug fix Test pling #58: Pull request #52 opened by babayagaofficial
January 12, 2024 17:50 6m 25s nucmer_block_bug_fix
nucmer_block_bug_fix
January 12, 2024 17:50 6m 25s
Merge pull request #50 from iqbal-lab-org/fix/update_plasnet Test pling #57: Commit 5de8a03 pushed by babayagaofficial
December 20, 2023 11:46 10m 59s main
main
December 20, 2023 11:46 10m 59s
fix: update plasnet to 0.4.1 Test pling #56: Pull request #50 opened by leoisl
December 20, 2023 11:25 11m 31s fix/update_plasnet
fix/update_plasnet
December 20, 2023 11:25 11m 31s
Merge pull request #48 from iqbal-lab-org/fix/remove_pip Test pling #55: Commit 7dbd487 pushed by babayagaofficial
December 19, 2023 16:51 16m 8s main
main
December 19, 2023 16:51 16m 8s
fix: remove poetry infrastructure and update integration tests and CI Test pling #54: Pull request #48 synchronize by leoisl
December 19, 2023 16:33 13m 44s fix/remove_pip
fix/remove_pip
December 19, 2023 16:33 13m 44s
fix: remove poetry infrastructure and update integration tests and CI Test pling #53: Pull request #48 synchronize by leoisl
December 19, 2023 16:28 3m 8s fix/remove_pip
fix/remove_pip
December 19, 2023 16:28 3m 8s
fix: remove poetry infrastructure and update integration tests and CI Test pling #52: Pull request #48 opened by leoisl
December 19, 2023 16:20 3m 55s fix/remove_pip
fix/remove_pip
December 19, 2023 16:20 3m 55s
DCJ graph directory name changed to include the threshold subcommunit… Test pling #51: Commit ef17752 pushed by babayagaofficial
December 18, 2023 14:30 27s main
main
December 18, 2023 14:30 27s
reduced default resources for ILP Test pling #50: Commit 45066d9 pushed by babayagaofficial
December 18, 2023 10:47 45s main
main
December 18, 2023 10:47 45s
handle fasta inputs from different directories Test pling #49: Commit 40c69ff pushed by babayagaofficial
December 15, 2023 17:59 3m 42s main
main
December 15, 2023 17:59 3m 42s
fixing syntax error (was typing a float as a float) Test pling #48: Commit 0ffa81d pushed by babayagaofficial
December 12, 2023 15:54 3m 44s main
main
December 12, 2023 15:54 3m 44s
update plasnet version Test pling #47: Commit 22e3015 pushed by babayagaofficial
December 12, 2023 13:03 33s main
main
December 12, 2023 13:03 33s