reduced default resources for ILP

iqbal-lab-org · Dec 18, 2023 · 45066d9 · 45066d9
1 parent 85979fc
commit 45066d9
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/pling/dcj_snakemake/Snakefile b/pling/dcj_snakemake/Snakefile
@@ -39,7 +39,7 @@ if config["ilp_solver"] == "GLPK":
             timelimit=get_timelimit(config["timelimit"]),
             snakefile_dir=os.path.dirname(sys.argv[sys.argv.index("--snakefile")+1]),
             pling_root_dir = get_pling_root_dir()
-        threads: config["ilp_threads"]
+        threads: 1 #no multithreading available for GLPK
         resources:
             mem_mb = lambda wildcards, attempt: attempt * config["ilp_mem"]
         conda: "../envs/ding_and_glpk.yaml"

diff --git a/pling/resources.tsv b/pling/resources.tsv
@@ -8,7 +8,7 @@ consolidation	NA	4000
 deduplication	1	10000
 blocks	NA	4000
 unimog_to_ilp	NA	4000
-ilp	1	100000
+ilp	1	10000
 dcj_dist	NA	4000
 dcj_matrix	NA	4000
 build_DCJ_graph	NA	8000