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ci: setting up singularity in a different way so that we don't get th…
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…e error

Singularity with micromamba is erroring out:
ERROR  : Session directory does not exist: /home/runner/micromamba/envs/test-env/var/singularity/mnt/session
ABORT  : Retval = 255
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leoisl committed Nov 27, 2023
1 parent 2a5ae97 commit d0fa25c
Showing 1 changed file with 4 additions and 1 deletion.
5 changes: 4 additions & 1 deletion .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -36,11 +36,14 @@ jobs:
snakemake
mamba
poetry
singularity
init-shell: bash
cache-environment: true
post-cleanup: 'all'

- uses: eWaterCycle/setup-singularity@v7
with:
singularity-version: 3.6.4

- name: Install
shell: bash -el {0}
run: |
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