Build

Build Wheels #6

	name: Build

	on: [workflow_dispatch]

	jobs:
	build:
	name: "Build"
	runs-on: ubuntu-latest

	steps:
	- uses: "actions/checkout@v4"
	with:
	fetch-depth: 0
	submodules: "recursive"

	# Setup env
	- uses: "actions/setup-python@v5"
	with:
	python-version: "3.12"

	- name: Installs for Python 3.12
	run: \|
	python --version
	pip install --upgrade pip wheel setuptools pybind11

	- name: Setup Lib Dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y libeigen3-dev libboost-all-dev

	- name: Setup Cpp
	uses: aminya/setup-cpp@v1
	with:
	cmake: true

	- name: Setup and Build IQTree
	run: \|
	cd iqtree2
	git apply ../fpic-iqtree.patch
	mkdir build && cd build
	cmake -DIQTREE_FLAGS="single" -DBUILD_LIB=ON ..
	make -j
	cd ../..
	mv iqtree2/build/libiqtree2.a pyiqtree/libiqtree/

	- name: Build and Install PyIQTree
	run: pip install ".[dev]"

	- name: Test
	run: \|
	pytest tests/test_RF_distance.py
	pytest tests/test_generate_random_tree_file.py

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