Build

Build Wheels #14

	name: Build

	on: [workflow_dispatch]

	jobs:
	build:
	name: Build on ${{ matrix.os }}
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	# macos-13 is an intel runner, macos-14 is apple silicon
	# os: [ubuntu-latest, windows-latest, macos-13, macos-14]
	os: [ubuntu-latest]

	steps:
	- uses: "actions/checkout@v4"
	with:
	fetch-depth: 0
	submodules: "recursive"

	# # Setup env
	# - uses: "actions/setup-python@v5"
	# with:
	# python-version: "3.12"

	# - name: Installs for Python 3.12
	# run: \|
	# python --version
	# pip install --upgrade pip wheel setuptools pybind11

	# - name: Setup Cpp
	# uses: aminya/setup-cpp@v1
	# with:
	# cmake: true

	# - name: Build and Install PyIQTree
	# run: pip install ".[dev]"
	- name: Build wheels
	uses: pypa/[email protected]
	env: # Can specify per os - e.g. CIBW_BEFORE_ALL_LINUX, CIBW_BEFORE_ALL_MACOS, CIBW_BEFORE_ALL_WINDOWS
	CIBW_BEFORE_ALL_LINUX: \|
	yum update -y
	yum install -y eigen3-devel boost-devel
	cd iqtree2
	git apply ../fpic-iqtree.patch
	mkdir build && cd build
	cmake -DIQTREE_FLAGS="single" -DBUILD_LIB=ON ..
	make -j
	cd ../..
	mv iqtree2/build/libiqtree2.a pyiqtree/libiqtree/

	# - name: Test
	# run: \|
	# pytest tests/test_RF_distance.py
	# pytest tests/test_generate_random_tree_file.py
	- name: Upload wheels
	uses: actions/upload-artifact@v4
	with:
	name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
	path: ./wheelhouse/*.whl

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