Add dependencies to pyproject.toml and set default version to 0.0.0 i…

…n __init__.py

README.md

@@ -1,6 +1,6 @@
 # cellmap.data
 
-[![License](https://img.shields.io/pypi/l/cellmap.data.svg?color=green)](https://github.com/rhoadesScholar/cellmap.data/raw/main/LICENSE)
+[![License](https://img.shields.io/pypi/l/cellmap.data.svg?color=green)](https://github.com/rhoadesScholar/cellmap.data/main/LICENSE)
 [![PyPI](https://img.shields.io/pypi/v/cellmap.data.svg?color=green)](https://pypi.org/project/cellmap.data)
 [![Python Version](https://img.shields.io/pypi/pyversions/cellmap.data.svg?color=green)](https://python.org)
 [![CI](https://github.com/rhoadesScholar/cellmap.data/actions/workflows/ci.yml/badge.svg)](https://github.com/rhoadesScholar/cellmap.data/actions/workflows/ci.yml)

pyproject.toml

@@ -25,7 +25,13 @@ classifiers = [
     "Typing :: Typed",
 ]
 dynamic = ["version"]
-dependencies = []
+dependencies = [
+    "tensorstore",
+    "pydantic",
+    "torch",
+    "torchvision",
+    "numpy",
+]
 
 # extras
 # https://peps.python.org/pep-0621/#dependencies-optional-dependencies
@@ -42,6 +48,9 @@ dev = [
     "rich",
     "ruff",
 ]
+all = [
+    "cellmap.data[dev,test]",
+]
 
 [project.urls]
 homepage = "https://github.com/rhoadesScholar/cellmap.data"
@@ -74,7 +83,7 @@ line-length = 88
 target-version = "py38"
 src = ["src"]
 # https://beta.ruff.rs/docs/rules/
-select = [
+lint.select = [
     "E",    # style errors
     "W",    # style warnings
     "F",    # flakes
@@ -91,7 +100,7 @@ select = [
 # otherwise, see:
 # https://beta.ruff.rs/docs/faq/#does-ruff-support-numpy-or-google-style-docstrings
 # https://github.com/charliermarsh/ruff/issues/2606
-ignore = [
+lint.ignore = [
     "D100", # Missing docstring in public module
     "D107", # Missing docstring in __init__
     "D203", # 1 blank line required before class docstring
@@ -102,7 +111,7 @@ ignore = [
     "D416", # Section name should end with a colon
 ]
 
-[tool.ruff.per-file-ignores]
+[tool.ruff.lint.per-file-ignores]
 "tests/*.py" = ["D", "S"]
 
 # https://docs.pytest.org/en/6.2.x/customize.html

src/cellmap_data/__init__.py

@@ -1,10 +1,16 @@
-"""Utility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, and PyDantic."""
+"""
+CellMap Data Loading Module.
+
+Utility for loading CellMap data for machine learning training,
+utilizing PyTorch, TensorStore, and PyDantic.
+"""
+
 from importlib.metadata import PackageNotFoundError, version
 
 try:
     __version__ = version("cellmap.data")
 except PackageNotFoundError:
-    __version__ = "uninstalled"
+    __version__ = "0.0.0"
 
 __author__ = "Jeff Rhoades"
 __email__ = "[email protected]"