Skip to content

janelia-cellmap/expr_c-elegans

Folders and files

NameName
Last commit message
Last commit date

Latest commit

fb3eb99 · Aug 1, 2024

History

6 Commits
Aug 1, 2024
Aug 1, 2024
Aug 1, 2024
Aug 1, 2024
Aug 1, 2024
Aug 1, 2024
Aug 1, 2024
Aug 1, 2024
Aug 1, 2024

Repository files navigation

** This repo is a scratch pad of the scripts used for c-elegans analysis. **

Current c-eleganss datasets are :

  • jrc_c-elegans-op50-1
  • jrc_c-elegans-bw-1
  • jrc_c-elegans-comma-1

Current Organelle target is :

  • Mitochondria [mito]
  • Lipid droplets [ld]

jrc_c-elegans-op50-1 and jrc_c-elegans-bw-1 are a bit similar that's why i am training a model using crops from both datasets. jrc_c-elegans-comma-1 is a bit different and no much crops are available for it yet. Lipids in jrc_c-elegans-op50-1 and jrc_c-elegans-bw-1 are easy to identify as they are big and round. that's why i am using a scratch small unet for them

I am using DaCapo for training : https://github.com/janelia-cellmap/dacapo And a process-blockwise for inference and postprocessing : https://github.com/janelia-cellmap/process-blockwise

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages