Update cosym options

jbeilstenedmands · May 7, 2024 · 2b81e8f · 2b81e8f
1 parent 072d5c0
commit 2b81e8f
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/src/xia2/Modules/SSX/data_reduction_programs.py b/src/xia2/Modules/SSX/data_reduction_programs.py
@@ -715,6 +715,8 @@ def _extract_cosym_params(reduction_params, index):
         unit_cell_clustering.threshold=None
         lattice_symmetry_max_delta={reduction_params.lattice_symmetry_max_delta}
         partiality_threshold={reduction_params.partiality_threshold}
+        cc_weights=sigma
+        weights=standard_error
     """
     if reduction_params.d_min:
         # note - allow user phil to override the overall xia2 d_min - might
@@ -924,6 +926,8 @@ def cosym_reindex(
     params.lattice_symmetry_max_delta = max_delta
     params.partiality_threshold = partiality_threshold
     params.min_i_mean_over_sigma_mean = 0.5
+    params.cc_weights = "sigma"
+    params.weights = "standard_error"
     if reference:
         params.reference = os.fspath(reference)
     if d_min: