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jfkonecn · Nov 27, 2024 · 08d933d · 08d933d
1 parent 8458c59
commit 08d933d
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Showing 2 changed files with 21 additions and 6 deletions.
diff --git a/src/main/webapp/app/pages/somaticGermlineAlterationPage/HighestLevelEvidence.tsx b/src/main/webapp/app/pages/somaticGermlineAlterationPage/HighestLevelEvidence.tsx
@@ -12,12 +12,12 @@ type HighestLevelEvidenceProp = {
     | 'DiagnosticImplication'
     | 'PrognosticImplication'
     | 'Fda';
-  level: string;
+  level: string | undefined;
 };
 
 export default function HighestLevelEvidence({
   type,
-  level: rawLevel,
+  level: rawLevel = '',
 }: HighestLevelEvidenceProp): JSX.Element {
   if (type === 'Sensitive') {
     const level = levelOfEvidence2Level(rawLevel, false);

diff --git a/src/main/webapp/app/pages/somaticGermlineAlterationPage/SomaticGermlineAlterationPage.tsx b/src/main/webapp/app/pages/somaticGermlineAlterationPage/SomaticGermlineAlterationPage.tsx
@@ -150,6 +150,18 @@ export class SomaticGermlineAlterationPage extends React.Component<
     );
   }
 
+  @computed
+  get errorOccurred() {
+    return (
+      this.store.gene.isError ||
+      this.store.geneNumber.isError ||
+      this.store.ensemblGenes.isError ||
+      this.store.clinicalAlterations.isError ||
+      this.store.biologicalAlterations.isError ||
+      this.store.annotationData.isError
+    );
+  }
+
   @computed
   get documentTitle() {
     const content = [];
@@ -558,7 +570,8 @@ export class SomaticGermlineAlterationPage extends React.Component<
                       items={[
                         {
                           title: ONCOKB_TM,
-                          value: 'Likely Pathogenic',
+                          value: this.store.annotationData.result.germline
+                            .pathogenic,
                         },
                         {
                           title: 'Clinvar',
@@ -572,11 +585,13 @@ export class SomaticGermlineAlterationPage extends React.Component<
                       items={[
                         {
                           title: 'Penetrance',
-                          value: 'High',
+                          value: this.store.annotationData.result.germline
+                            .penetrance,
                         },
                         {
                           title: 'Inheritance',
-                          value: 'Autosomal Dominant',
+                          value: this.store.annotationData.result.germline
+                            .inheritanceMechanism,
                         },
                       ]}
                     />
@@ -734,7 +749,7 @@ export class SomaticGermlineAlterationPage extends React.Component<
             </Container>
           </>
         ) : (
-          <If condition={this.store.annotationData.isError}>
+          <If condition={this.errorOccurred}>
             <Then>
               <Alert variant="warning" className={'text-center'}>
                 An error occurred while annotating your variant.