Merge pull request #103 from jhudsl/repo-sync/AnVIL_Template/default

🔄 Synced file(s) with jhudsl/AnVIL_Template

.github/workflows/pull_request.yml

@@ -171,7 +171,7 @@ jobs:
         id: feedback
         if: ${{needs.yaml-check.outputs.toggle_feedback_link == 'yes'}}
         run: |
-          bash scripts/AnVIL_Feedback_Script.sh
+          bash .github/AnVIL_Feedback_Script.sh
           git add _output.yml
           git commit -m 'Set up feedback link' || echo "No changes to commit"
 

.github/workflows/render-all.yml

@@ -67,7 +67,7 @@ jobs:
       - name: Set up feedback link
         if: ${{needs.yaml-check.outputs.toggle_feedback_link == 'yes'}}
         run: |
-          bash scripts/AnVIL_Feedback_Script.sh
+          bash .github/AnVIL_Feedback_Script.sh
           git add _output.yml
           git commit -m 'Set up feedback link' || echo "No changes to commit"
 

_output.yml

@@ -2,6 +2,7 @@ bookdown::gitbook:
   # When using multiple css files, the default file path will be the first one #
   css: [assets/style.css, assets/AnVIL_style/anvil.css]
   includes:
+    in_header: GA_Script.html
     before_body: assets/AnVIL_style/big-image_anvil.html
     after_body: assets/AnVIL_style/footer.html
   highlight: tango
@@ -15,6 +16,6 @@ bookdown::gitbook:
        <p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
        <a href="http://jhudatascience.org/"><img src="https://jhudatascience.org/images/dasl.png" style=" width: 80%; padding-left: 40px; padding-top: 8px; vertical-align: top "</a>
        <p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
-       <p style="padding-left: 40px;"><div class="trapezoid" style = "padding-left: 40px;"><span><a href="https://docs.google.com/forms/d/e/1FAIpQLScrDVb_utm55pmb_SHx-RgELTEbCCWdLea0T3IzS0Oj00GE4w/viewform?usp=pp_url&entry.1565230805=AnVIL+Instructor+Guide"> Click here to provide feedback</a> <img src="assets/itcr_arrow.png" style=" width: 10%" ></span></div></p>
+       <p style="padding-left: 40px;"><div class="trapezoid" style = "padding-left: 40px;"><span><a href="https://docs.google.com/forms/d/e/1FAIpQLScrDVb_utm55pmb_SHx-RgELTEbCCWdLea0T3IzS0Oj00GE4w/viewform?usp=pp_url&entry.1565230805=your+course"> Click here to provide feedback</a> <img src="assets/itcr_arrow.png" style=" width: 10%" ></span></div></p>
        
-# Note: Do not edit the feedback link in this file. This is automatically edited through the render-preview and render-bookdown workflows.
+# Note: Do not edit the feedback link in this file. This is automatically edited through the render-preview and render-bookdown workflows.

index.Rmd

@@ -41,4 +41,3 @@ _Programming skills_
 Additional guides are provided to help you with Workspaces, launch interactive tools, and start working with data. Learn more about AnVIL by visiting https://anvilproject.org or reading the [article in Cell Genomics](https://www.sciencedirect.com/science/article/pii/S2666979X21001063).
 
 Please check out our full collection of AnVIL and related resources: https://hutchdatascience.org/AnVIL_Collection/
-

style-sets/AnVIL/index.Rmd

@@ -38,3 +38,4 @@ Please check out our full collection of AnVIL and related resources: https://hut
 <!-- - Objective 3 -->
 
 <!-- Please also see the Bioinformatics core competencies for undergraduate life sciences education from NIBLSE: https://journals.plos.org/plosone/article/figure?id=10.1371/journal.pone.0196878.t002 -->
+