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University of Antwerp; Pontifical Catholic University of Rio Grande do Sul
- https://www.researchgate.net/profile/Jonas-Lescroart
Stars
Gene finding pipeline for selenoprotein and selenocysteine machinery
Fast implementation of the neighbour-joining phylogenetic inference method
scripts to calculate and plot concordance vectors
VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
Pipeline to calculate de novo mutation rates from parent-offspring trios
Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.
Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
A Nextflow workflow to generate lift over files for any pair of genomes
HemTools: a collection of NGS pipelines and bioinformatic analyses
Calculate summary statistics and manipulate multiple sequence alignments
GenMap - Fast and Exact Computation of Genome Mappability
Recombination Landscape Estimation using Recurrent Neural Networks
A phylogeny dating method using least-squares algorithms and criteria
Download FASTQ files from SRA or ENA repositories.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A pipeline to generate a phylogenetic tree from huge SNP data
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org