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changed cluster code to test performance into bash script to submit a…
…nother bash script
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scripts/bash/cluster/performanceAnalysis/changingPerformanceParametersEuroHPC.sh
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# fill this part with the configuration for slurm | ||
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# control if parameters are passed, if only three arguments are passed, the maximum number of processors is also passed | ||
if [ $# -ne 3 ]; then | ||
echo $# arguments passed | ||
echo "Please pass the folder with the inputs and the folder where to save the outputs and the maximum number of processors" | ||
exit 1 | ||
fi | ||
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inputsFolder=$1 | ||
outputFolder=$2 | ||
processors=$3 | ||
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srun -n $processors ./build/c2c-sepia-MPI --fUniqueGraph $inputsFolder/metapathwayEdges.tsv \ | ||
--initialPerturbationPerTypeFolder $inputsFolder/inputValues \ | ||
--typeInteractionFolder $inputsFolder/interactions \ | ||
--nodeDescriptionFile $inputsFolder/nodesInfo.tsv \ | ||
--dissipationModel scaled \ | ||
--dissipationModelParameters 0.5 \ | ||
--propagationModel neighbors \ | ||
--propagationModelParameters 0.5 \ | ||
--intertypeIterations 20 \ | ||
--intratypeIterations 5 \ | ||
--virtualNodesGranularity typeAndNode \ | ||
--saturation \ | ||
--outputFolder $outputFolder |
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