changed cluster code to test performance into bash script to submit a…

…nother bash script
josura · Aug 19, 2024 · 7b7ec98 · 7b7ec98
1 parent 279d6f6
commit 7b7ec98
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diff --git a/scripts/bash/cluster/performanceAnalysis/changingPerformanceParametersEuroHPC.sh b/scripts/bash/cluster/performanceAnalysis/changingPerformanceParametersEuroHPC.sh
@@ -0,0 +1,26 @@
+# fill this part with the configuration for slurm
+
+# control if parameters are passed, if only three arguments are passed, the maximum number of processors is also passed
+if [ $# -ne 3 ]; then
+    echo $# arguments passed
+    echo "Please pass the folder with the inputs and the folder where to save the outputs and the maximum number of processors"
+    exit 1
+fi
+
+inputsFolder=$1
+outputFolder=$2
+processors=$3
+
+srun -n $processors ./build/c2c-sepia-MPI --fUniqueGraph $inputsFolder/metapathwayEdges.tsv \
+    --initialPerturbationPerTypeFolder $inputsFolder/inputValues \
+    --typeInteractionFolder $inputsFolder/interactions \
+    --nodeDescriptionFile $inputsFolder/nodesInfo.tsv \
+    --dissipationModel scaled \
+    --dissipationModelParameters 0.5 \
+    --propagationModel neighbors \
+    --propagationModelParameters 0.5 \
+    --intertypeIterations 20 \
+    --intratypeIterations 5 \
+    --virtualNodesGranularity typeAndNode \
+    --saturation \
+    --outputFolder $outputFolder
diff --git a/...r/changingPerformanceParametersEuroHPC.sh → ...eAnalysis/submitPerformanceExperiments.sh b/...r/changingPerformanceParametersEuroHPC.sh → ...eAnalysis/submitPerformanceExperiments.sh
@@ -19,18 +19,8 @@ for nodes in ${nodesList[@]}; do
     if [ ! -d $outputFolderName ]; then
         mkdir -p $outputFolderName
     fi
-    # run the simulation
-    mpirun -np $maxProcessors ./build/c2c-sepia-MPI --fUniqueGraph $inputsFolder/metapathwayEdges.tsv \
-        --initialPerturbationPerTypeFolder $inputsFolder/inputValues \
-        --typeInteractionFolder $inputsFolder/interactions \
-        --nodeDescriptionFile $inputsFolder/nodesInfo.tsv \
-        --dissipationModel scaled \
-        --dissipationModelParameters 0.5 \
-        --propagationModel neighbors \
-        --propagationModelParameters 0.5 \
-        --intertypeIterations 20 \
-        --intratypeIterations 5 \
-        --virtualNodesGranularity typeAndNode \
-        --saturation \
-        --outputFolder $outputFolderName
+    # run the simulation, start from 1 processor to the maximum number of processors
+    for i in $(seq 1 $maxProcessors); do
+        bash submitPerformanceExperiments.sh $inputsFolder $outputFolderName $i
+    done
 done